etetoolkit ete issues - Githubissues

etetoolkit / ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

http://etetoolkit.org

GNU General Public License v3.0

768 stars 216 forks source link

issues

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Scale Bar Calculation

#753 metehaansever opened 1 month ago
0
AlignLinkFace malfunction in circular tree mode

#752 dengzq1234 opened 1 month ago
0
Ete4 #750

#751 dengzq1234 closed 1 month ago
2
Allow option to ignore bad taxonomic annotation

#750 dengzq1234 opened 1 month ago
0
Lift `sqlite3`'s `check_same_thread` flag to `NCBITaxa.__init__()`

#749 rtviii closed 2 weeks ago
1
ete evol: Incorrect documentation for the b_free - b_neut test

#748 lab83bio opened 1 month ago
0
ete evol: Inconsistent marking between --mark and --internal options

#747 lab83bio opened 1 month ago
0
Fix relaxed phylip parsing by also allowing tab seperator

#746 cfblaeb opened 3 months ago
0
robinson_foulds with 'unrooted_trees' and 'correct_by_polytomy_size' should probably not correct the root?

#745 Gullumluvl opened 3 months ago
0
Update ncbiquery.py

#744 mwittep closed 3 months ago
0
[Update ncbiquery.py] fixing typo in NCBI url

#743 hjgwak closed 3 months ago
1
fix get_distance() for topology_only=True

#742 lenacoll opened 4 months ago
0
`get_distance()` with `topology_only=True` should return number of edges, not nodes (ete3)

#741 lenacoll opened 4 months ago
0
Bug in `get_distance()` with flag `topology_only=True` in ete3

#740 lenacoll opened 4 months ago
0
Stable ete4 release

#739 Zethson closed 1 month ago
5
taxid not found

#738 WJT0925 opened 6 months ago
1
tests/test_evol.py: port assertions to python3.12.

#737 emollier opened 6 months ago
0
get_common_ancestor() replacement

#736 MohammadDara closed 7 months ago
1
Issue with downloading Newick tree in ete4

#735 vmikk opened 7 months ago
0
Leaf names visible despite show_leaf_name=False

#734 michaelgruenstaeudl opened 7 months ago
1
Nodes label get duplicated every time show/render are called

#733 cerlumi closed 7 months ago
1
only take leaves' species attributes as taxid

#732 dengzq1234 closed 7 months ago
0
update GTDB module and Taxa tutorial

#731 dengzq1234 closed 7 months ago
1
fix ncbi annotation using other properties

#730 dengzq1234 closed 8 months ago
1
Fix issue #721 ultrametric attribute malfunction when setting from TreeStyle()

#729 dengzq1234 closed 7 months ago
0
Show branch length and support by default

#728 dengzq1234 closed 8 months ago
1
branch length and support dont show on leaf node

#727 dengzq1234 closed 8 months ago
1
correct ete4_#725

#726 dengzq1234 closed 8 months ago
1
Miss exception in loading NoteStyle from treeview in core

#725 dengzq1234 closed 8 months ago
0
update Ete4 tutorial drawing for smartview

#724 dengzq1234 closed 8 months ago
2
node options panel for root doesn't show

#723 dengzq1234 closed 8 months ago
1
Ete4 tutorial taxa

#722 dengzq1234 closed 8 months ago
1
ultrametric malfunctions in code

#721 dengzq1234 closed 8 months ago
1
Ete4 gtdb

#720 dengzq1234 closed 8 months ago
2
naming of `zoom around node`

#719 dengzq1234 opened 8 months ago
0
Implement tree printing to avoid maximum recursion depth error

#718 harryrichman opened 8 months ago
0
ncbiquery fuzzy not working

#717 G-Molano-LA opened 8 months ago
0
Modify ladderize method to avoid recursion depth error

#716 harryrichman closed 8 months ago
1
Implement ladderize method to avoid maximum recursion depth error

#715 harryrichman closed 8 months ago
1
Add feature in `populate` method to sample from common tree distributions

#714 harryrichman closed 7 months ago
3
Refactor set outgroup function and update tests

#713 jhcepas closed 8 months ago
2
Fix broken str.join() in ncbiquery.generate_table()

#712 dorbarker closed 9 months ago
0
Online docs

#711 jhcepas closed 9 months ago
0
ete3 pip and requirements.txt

#710 NicoMaillet closed 9 months ago
1
html text formatting

#709 haochenz96 opened 9 months ago
0
(Py)Qt bug resulting in variable spacing between adjacent text boxes, scaling with string length

#708 Hemimastix opened 9 months ago
1
Inconsistent results with merged NCBI TaxIDs

#707 lm-jkominek opened 9 months ago
0
Annotating leaves with NCBI taxonomy

#706 lm-jkominek closed 9 months ago
1
Racecondition when downloading color definition files

#702 sirno opened 10 months ago
0
Remove PyQt5 dependency

#700 sirno closed 9 months ago
4