etetoolkit ete issues - Githubissues

etetoolkit / ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

http://etetoolkit.org

GNU General Public License v3.0

795 stars 214 forks source link

issues

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ete4 Windows Install Error: KeyError 'HOME'

#763 Anthony-J-G opened 1 week ago
0
status of library?

#762 vsoch closed 2 weeks ago
7
Update from faster

#761 jordibc closed 3 weeks ago
0
Faster

#760 jordibc closed 1 month ago
0
resolve_polytomy() error

#759 silviaprietob opened 2 months ago
1
Updates from branch faster

#758 jordibc closed 2 months ago
0
tree.pyx: Use absolute imports.

#757 jordibc closed 2 months ago
0
Remove obsolete clustering stuff and nexml

#756 jordibc closed 2 months ago
0
Push ete4 on conda and/or pypi

#755 marieBvr opened 3 months ago
1
NCBI - taxid to names - newick tree

#754 kullrich opened 3 months ago
1
Scale Bar Calculation

#753 metehaansever opened 5 months ago
0
AlignLinkFace malfunction in circular tree mode

#752 dengzq1234 opened 6 months ago
0
Ete4 #750

#751 dengzq1234 closed 5 months ago
2
Allow option to ignore bad taxonomic annotation

#750 dengzq1234 opened 6 months ago
0
Lift `sqlite3`'s `check_same_thread` flag to `NCBITaxa.__init__()`

#749 rtviii closed 5 months ago
1
ete evol: Incorrect documentation for the b_free - b_neut test

#748 lab83bio opened 6 months ago
0
ete evol: Inconsistent marking between --mark and --internal options

#747 lab83bio opened 6 months ago
0
Fix relaxed phylip parsing by also allowing tab seperator

#746 cfblaeb opened 8 months ago
0
robinson_foulds with 'unrooted_trees' and 'correct_by_polytomy_size' should probably not correct the root?

#745 Gullumluvl opened 8 months ago
0
Update ncbiquery.py

#744 mwittep closed 8 months ago
0
[Update ncbiquery.py] fixing typo in NCBI url

#743 hjgwak closed 8 months ago
1
fix get_distance() for topology_only=True

#742 lenacoll opened 9 months ago
0
`get_distance()` with `topology_only=True` should return number of edges, not nodes (ete3)

#741 lenacoll opened 9 months ago
0
Bug in `get_distance()` with flag `topology_only=True` in ete3

#740 lenacoll opened 9 months ago
0
Stable ete4 release

#739 Zethson closed 5 months ago
5
taxid not found

#738 WJT0925 opened 10 months ago
1
tests/test_evol.py: port assertions to python3.12.

#737 emollier opened 11 months ago
0
get_common_ancestor() replacement

#736 MohammadDara closed 11 months ago
1
Issue with downloading Newick tree in ete4

#735 vmikk opened 11 months ago
0
Leaf names visible despite show_leaf_name=False

#734 michaelgruenstaeudl opened 12 months ago
1
Nodes label get duplicated every time show/render are called

#733 cerlumi closed 12 months ago
1
only take leaves' species attributes as taxid

#732 dengzq1234 closed 1 year ago
0
update GTDB module and Taxa tutorial

#731 dengzq1234 closed 1 year ago
1
fix ncbi annotation using other properties

#730 dengzq1234 closed 1 year ago
1
Fix issue #721 ultrametric attribute malfunction when setting from TreeStyle()

#729 dengzq1234 closed 1 year ago
0
Show branch length and support by default

#728 dengzq1234 closed 1 year ago
1
branch length and support dont show on leaf node

#727 dengzq1234 closed 1 year ago
1
correct ete4_#725

#726 dengzq1234 closed 1 year ago
1
Miss exception in loading NoteStyle from treeview in core

#725 dengzq1234 closed 1 year ago
0
update Ete4 tutorial drawing for smartview

#724 dengzq1234 closed 1 year ago
2
node options panel for root doesn't show

#723 dengzq1234 closed 1 year ago
1
Ete4 tutorial taxa

#722 dengzq1234 closed 1 year ago
1
ultrametric malfunctions in code

#721 dengzq1234 closed 1 year ago
1
Ete4 gtdb

#720 dengzq1234 closed 1 year ago
2
naming of `zoom around node`

#719 dengzq1234 opened 1 year ago
0
Implement tree printing to avoid maximum recursion depth error

#718 harryrichman opened 1 year ago
0
ncbiquery fuzzy not working

#717 G-Molano-LA opened 1 year ago
0
Modify ladderize method to avoid recursion depth error

#716 harryrichman closed 1 year ago
1
Implement ladderize method to avoid maximum recursion depth error

#715 harryrichman closed 1 year ago
1
Add feature in `populate` method to sample from common tree distributions

#714 harryrichman closed 1 year ago
3