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As part of our QC, @LiNiMGI and I noticed that there are annotations not passing because they have 'invalid' relations in annotation extensions. Here is the list:
Invalid Relation in GO-Property
G…
ukemi updated
7 months ago
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Hi,
I am attempting to annotate a customized VCF file using NCBI's GFF and (fna) FASTA files for the Newcastle disease virus (https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_004786615.1/). However, …
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R code: [25-compare-2021-2022.Rmd](https://github.com/grace-ac/paper-pycno-sswd-2021-2022/blob/main/code/25-compare-2021-2022.Rmd)
Repository: [paper-pycno-sswd-2021-2022](https://github.com/grace…
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We talked about this already, but I'd like to take action and update the Datastore where appropriate.
There are a number of `gene_models_main` GFFs that have the **Name** attribute starting with _g…
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I would like to suggest replacing the boolean representation of GPR associations with a true Gene-Protein-Reaction association schema.
Here are few reasons for this:
1. Gene expression is not bo…
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**Query:** [risk.json](https://github.com/NCATSTranslator/testing/blob/main/ars-requests/not-none/1.2/risk.json)
**PK:** f357829d-7d4f-4046-af62-2d497b277651
**Control:** Tobacco, smoking, asbesto…
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Here is how the reaction [R-HSA-163743](https://reactome.org/content/detail/R-HSA-163743) "Transcriptional activation of ACACA by ChREBP:MLX" (the middle box) is currently converted:
 is an API and a repository of ready-to-use trained models for regulatory genomics. It currently contains 1709 different mo…
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There appear to be 3 aspects of the regulation of cell size.
1. cell size control
currently an exact synonym of "regulation of cell size"
The processes which maintain consistent size during gr…
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Hi Pascale
Are we planning to keep BMP secretion and Child terms?
GO:0038055 BMP secretion
Or will these be production terms?
Thanks
Ruth