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datastore-issues
mostly for issues pertaining to the content of the legumeinfo datastore; may also relate to characteristics of its user interface or managing the mirroring process to the legfed instance
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glyma.Wm82.gnm2.div.Song_Hyten_2015.vcf
#216
jd-campbell
opened
2 weeks ago
0
Commit expression collections
#215
StevenCannon-USDA
closed
3 weeks ago
10
Wm82_ISU01.gnm2.mrk needs to be renamed
#214
jd-campbell
closed
3 weeks ago
2
New A. hypogaea genome from Phytozome: https://phytozome-next.jgi.doe.gov/info/AhypogaeaLine8_v1_3
#213
adf-ncgr
opened
1 month ago
0
New genome assembly for Arachis duranensis strain K30065
#212
StevenCannon-USDA
opened
2 months ago
0
New genome for Arachis duranensis strain K30060
#211
StevenCannon-USDA
opened
2 months ago
0
phavu.G19833.gnm1.ann1.expr.Negro_jamapa.ORourke_Iniguez_2014 uses inconsistent sample identifiers
#210
adf-ncgr
closed
2 months ago
2
New genome and annotations for Cercis canadensis (two haplotypes)
#209
StevenCannon-USDA
opened
4 months ago
3
New genome and annotations for Chamaecrista fasciculata (two haplotypes)
#208
StevenCannon-USDA
opened
4 months ago
7
expression
#207
adf-ncgr
closed
3 months ago
5
Missing Data: mixed.qtl.Hwang_King_2016
#206
jd-campbell
opened
6 months ago
6
Zhang_Jiang_2020 citation needs to change
#204
maxglycine
closed
6 months ago
2
GlycineMine: “experiment” maps are not really useable (?)
#205
adf-ncgr
opened
6 months ago
4
New genome and annotations for Trifolium pratense
#203
StevenCannon-USDA
opened
7 months ago
0
New genome and annotations for Vicia villosa
#202
StevenCannon-USDA
opened
7 months ago
0
Change publication DOI for Wm82.gnm2.div.Torkamaneh_Laroche_2019
#201
maxglycine
closed
8 months ago
1
Add JGI names as aliases in assembly & annotation synopsis lines
#200
StevenCannon-USDA
opened
8 months ago
0
Add genome and annotations for Glycine max HJ117
#199
jd-campbell
opened
8 months ago
0
Add genome and annotations for Phytozome Glycine max Wm82 gnm6 ann1
#198
StevenCannon-USDA
opened
9 months ago
2
Wm82_ISU01.gnm2.JFPQ question
#197
jd-campbell
closed
9 months ago
4
Add genome and annotations for Phanera championii
#196
StevenCannon-USDA
opened
9 months ago
0
Add genome and annotations for Acacia crassicarpa
#195
StevenCannon-USDA
opened
9 months ago
6
New genome and annotations for Phaseolus coccineus
#194
StevenCannon-USDA
opened
9 months ago
2
RFO: Directory and file name structure for gene family collections
#192
StevenCannon-USDA
opened
10 months ago
19
New genome+annotations for Cercis chinensis
#191
StevenCannon-USDA
opened
10 months ago
0
New genome+annotations for Glycine max Wm82_NJAU.gnm1
#190
StevenCannon-USDA
opened
10 months ago
6
New genome+annotations for Arachis stenosperma (GenBank annotation)
#189
StevenCannon-USDA
opened
10 months ago
24
QTLs with markers on different chromosomes
#188
sammyjava
closed
11 months ago
3
Gene Name attributes that start with gensp.
#187
sammyjava
opened
11 months ago
8
cicar.ICC4958.gnm2.ann1.LCVX.gene_models_main.gff3.gz has 153 genes w/o Note and 13,429 w/o GO terms
#186
sammyjava
opened
11 months ago
2
Genes missing Note attribute
#185
sammyjava
closed
1 year ago
8
New genome+annotations for Wm82 gnm5 and Lee gnm3 (Varshney/Nguyen)
#184
StevenCannon-USDA
opened
1 year ago
5
Phaseolus vulgaris cv OAC Rex genome
#183
StevenCannon-USDA
closed
1 year ago
2
Add Phaseolus coccineus genome from phytozome
#182
adf-ncgr
closed
9 months ago
1
Rename Wm82_ISU01
#181
StevenCannon-USDA
closed
9 months ago
5
empty correspondence & descriptions file
#180
jd-campbell
opened
1 year ago
0
RFO: update annotation GFFs to use Ensemble Plants / Plant Reactome gene names
#179
sammyjava
closed
1 year ago
5
Gene names inconsistently have gensp.Strain prepended
#178
sammyjava
closed
1 year ago
13
New genome+annotation set: Glycine max, Jidou 17 (JD17)
#177
StevenCannon-USDA
opened
1 year ago
3
Duplicate IDs in vicfa.Tiffany.gnm1.ann1.Y54X.gene_models_main.gff3.gz
#176
sammyjava
closed
1 year ago
1
Duplicate IDs in vicfa.Hedin2.gnm1.ann1.PTNK.gene_models_main.gff3.gz
#175
sammyjava
closed
1 year ago
1
arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz is funky - different sequences from assembly?
#174
sammyjava
closed
1 year ago
9
arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3 has sundry "None" ID records
#173
sammyjava
closed
1 year ago
1
glyma.Zh13.gnm2.ann1.FJ3G.gene_models_main.gff3.gz is not sorted
#172
sammyjava
closed
1 year ago
4
glyma.Wm82_ISU01.gnm2.ann1.FGFB.gene_models_main.gff3.gz has bad (non-LIS) IDs
#171
sammyjava
closed
1 year ago
9
Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/chafa.MN87.gnm1.ann1.LWFM.gene_models_main.gff3.gz
#170
adf-ncgr
closed
1 year ago
3
Cercis/canadensis/annotations/ISC453364.gnm1.ann1.HZJM/cerca.ISC453364.gnm1.ann1.HZJM.gene_models_main.gff3.gz
#169
adf-ncgr
closed
3 months ago
29
Annotation GFFs missing AHRD-generated Note attributes
#168
sammyjava
opened
1 year ago
10
fix chromosome naming for arahy.Tifrunner.gnm2.ann1.4K0L files
#167
adf-ncgr
closed
1 year ago
1
Vicia sativa genome (to go with our V. faba genomes)
#166
adf-ncgr
opened
1 year ago
0
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