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legumeinfo
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datastore-issues
mostly for issues pertaining to the content of the legumeinfo datastore; may also relate to characteristics of its user interface or managing the mirroring process to the legfed instance
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Vicia sativa genome (to go with our V. faba genomes)
#166
adf-ncgr
opened
1 year ago
0
Lablab purpureus, cv.
#165
StevenCannon-USDA
opened
1 year ago
3
Vicia faba genomes and annotations (cvs. Tiffany and Hedin2)
#164
StevenCannon-USDA
opened
1 year ago
1
Create missing pathway files
#163
sammyjava
opened
1 year ago
2
Arachis hypogaea BaileyII genome+annotations
#161
StevenCannon-USDA
opened
1 year ago
0
Arachis hypogaea Tifrunner Tifrunner.gnm2 and Tifrunner.gnm2.ann2
#160
StevenCannon-USDA
opened
1 year ago
0
Cercis canadensis genome
#159
adf-ncgr
opened
1 year ago
6
Lathyrus sativus genome
#158
adf-ncgr
opened
1 year ago
0
Arachis hypogaea chromosome names
#157
StevenCannon-USDA
opened
1 year ago
13
Annotation "primary" sequence files incongruent for Phaseolus acutifolius
#156
StevenCannon-USDA
closed
1 year ago
1
DS website needs support for pangenes
#155
sammyjava
closed
8 months ago
1
Annotation collections with genes in GFA that are not in GFF
#154
sammyjava
closed
1 year ago
6
Annotation GFFs with duplicate ID records
#153
sammyjava
closed
1 year ago
9
update seq_id_map.tsv files with chromosome types
#147
adf-ncgr
opened
1 year ago
0
26 new Glycine genomes & annotations from Liu et al. 2020
#146
StevenCannon-USDA
closed
1 year ago
16
Wm82.gnm1.div.Wen_Tan_2014 lacks README
#145
sammyjava
opened
1 year ago
8
Inconsistent gene names in Arachis annotations
#144
sammyjava
opened
1 year ago
1
New Arachis stenosperma genome
#142
StevenCannon-USDA
closed
3 months ago
3
New Vigna radiata genome and annotations
#143
StevenCannon-USDA
opened
1 year ago
1
Document datastore collection protocols plus issue template
#141
sammyjava
opened
1 year ago
4
VC1973A.gnm7.ann1.RWBG lacks GFA
#140
sammyjava
closed
1 year ago
8
Complete 8 cowpea QTL studies which lack qtl.tsv and associated map
#139
sammyjava
closed
1 year ago
0
Six (new?) arahy QTL collections need conversion from cmap files
#138
sammyjava
closed
2 years ago
2
qtl update log: +genetic_map column in qtl.tsv and qtlmrk.tsv
#137
sammyjava
closed
1 year ago
8
Wm82.gnm2.ann2.BG1Q needs LISification
#136
sammyjava
opened
2 years ago
0
Six invalid arahy QTL collections
#135
sammyjava
closed
2 years ago
1
Five annotations collections need a-fixin'
#134
sammyjava
closed
1 year ago
33
Load Arachis stenosperma genome
#133
sammyjava
closed
1 year ago
3
medtr.A17.gnm5.ann1_6.L2RX.legfed_v1_0.M65K.gfa.tsv.gz has invalid protein IDs
#132
sammyjava
closed
2 years ago
1
Missing Phavu QTL dataset?
#130
svengato
closed
2 years ago
1
Cicer lacks gene family-based pathways
#129
sammyjava
closed
2 years ago
2
alfalfa expression atlas data
#128
adf-ncgr
closed
2 years ago
5
expression data for cowpea pangenome
#127
adf-ncgr
closed
1 year ago
3
lencu collection CDC_Redberry.gnm2.ann1.5FB4 lacks mRNA FASTA
#126
sammyjava
closed
2 years ago
2
Escobar_Oladzad_2022 GFF is subset of Andean_MidAmer_GBS GFF
#125
sammyjava
opened
2 years ago
3
Grab markers for Caldas_Blair_2009 and create DOR364xG19833 and G2333xG19839 collections from paper
#124
sammyjava
closed
2 years ago
4
G2333_x_G19839.map.Checa_Blair_2008 lacks markers
#123
sammyjava
closed
2 years ago
6
Straighten out so-called Xana_x_Cornell49242.map/qtl.Gaitán-Solís_Duque_2002
#122
sammyjava
closed
2 years ago
3
CDCFrontier.gnm3.ann1.expr.mixed.Sutton_2018a/b have crappy sample identifiers
#121
sammyjava
closed
2 years ago
3
Check/update READMEs for new Cicer collections
#120
sammyjava
closed
2 years ago
3
arahy /maps/ and /genetic/ collections with inconsistent LG naming
#119
sammyjava
closed
1 year ago
3
CDCFrontier.gnm2.ann1.9M1L lacks mrna FASTA
#118
sammyjava
closed
2 years ago
1
Fix marker coordinates for Zhao_Teng_2017
#117
StevenCannon-USDA
closed
2 years ago
7
Change Glycine max diversity Bandillo_Lorenz_2017 collections
#116
StevenCannon-USDA
closed
2 years ago
1
descriptors for phytozome_10_2 gene families
#115
adf-ncgr
closed
2 years ago
3
new dataset: pisum sativum expression atlas
#114
adf-ncgr
closed
3 months ago
5
Expression collections failing validation
#113
sammyjava
closed
2 years ago
3
Annotation collections failing validation
#112
sammyjava
closed
2 years ago
4
CDCFrontier.gnm2.ann1.9M1L lacks mRNA FASTA
#111
sammyjava
closed
2 years ago
1
NCBI annotations
#110
adf-ncgr
opened
2 years ago
0
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