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Hello,
I've been recently tried to use singleR but it failed after the step creating a singleR object.
My seurat object contains 14793 genes and 1378 cells. I use:
singler = CreateSinglerObject(s…
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Hi,
The package seems to be incompatible with the last version of xgboost, probably because of the issue outlined here -
https://github.com/dmlc/xgboost/issues/5794
Using version 1.0.0.2 of xgb…
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Hello! Would it be possible to add a feature to extract the lists of elements making up the intersections, or also the elements unique to each group when plotting an UpsetR plot?
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Recently I'm trying to learn how to use the pipeline in 'How_to_produce_gene_set_scores.ipynb' in this project. I was surprised when I run **ImmuneSigs_function** and get different result from the exa…
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Hi @dviraran,
I would like to use xCell for deconvoluting some blood samples with a different reference profile.
I am wondering if you are using all the 5079 genes listed in "13059_2017_1349_MOESM…
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Dear Dr.dviraran,
Recently，I have tried my best effort to study the xcell methodology,unfortunately,there remains some questions bother me.I would appreciate if you have time to help me.
…
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Hi,
Thank you for this wonderful tool. I have a few questions regarding the input and output.
1. I understand that --match finds a drug that matches the DEG files used, but what does the option with…
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Hi Dvir,
I'm trying to annotate cells from a dataset of lung tumor cells and healthy tumor cells that I merged together. I can't figure out where I am making a mistake. I have pre-processed, normali…
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Hi, when I ran mod.train, I encountered this problem, as follows:
ValueError: Expected parameter rate (Tensor of shape (1, 1)) of distribution Gamma(concentration: tensor([[10.]]), rate: tensor([[nan…
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Targeted discovery of gut microbiome-remodeling compounds for the treatment of systemic inflammatory response syndrome – mSystems – Luyao Liu
https://journals.asm.org/doi/10.1128/msystems.00788-24