dviraran SingleR issues

dviraran / SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

GNU General Public License v3.0

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issues

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split test dataset and see differences in annotation

#164 yamihn opened 1 month ago
1
Assigning cell types problem

#163 esoaress closed 5 months ago
1
Error while downloading SingleR

#162 isaiao01 opened 6 months ago
1
Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. Traceback:

#161 ArzooShamoon opened 6 months ago
1
SingleR - "sc_data" is missing

#160 nitinmahajan20 opened 7 months ago
1
Positive correlation between the identity score of the right identities and the rest

#159 cesarsierran opened 8 months ago
0
SingleR error

#158 Jessa135 opened 9 months ago
1
Annotate Seurat object of several patients

#157 LeaLe88 opened 12 months ago
0
Can we use SingleR to annotate BulkRNAseq when reference is also bulk

#156 Rohit-Satyam closed 1 year ago
3
Microwell-Seq Mouse Cell Atlas link on README.md is not working

#155 vladimirkovacevic opened 1 year ago
0
Questions about confidence score

#154 Kevis9 opened 1 year ago
0
discriminant features

#153 antoine4ucsd opened 1 year ago
0
issue with input?

#152 eliabrodsky1 opened 2 years ago
0
SingleR Performance Issue

#151 rohitgarg2411 closed 2 years ago
0
SingleR() error

#150 Fathzadehm opened 2 years ago
2
Error in rowAnyNAs(DelayedArray(x))

#149 Lijunyao8 closed 3 years ago
1
create custom reference dataset

#148 andynkili closed 2 years ago
2
Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y'

#147 njtourtillott opened 3 years ago
4
Can't download MouseRNAseqData

#146 JiahuaQu opened 3 years ago
0
the Seurat3.2.2 load and SingleR 1.0.1 conflict error

#145 honghh2018 opened 3 years ago
1
'assay(<SingleCellExperiment>, i="character", ...)' invalid subscript 'i' 'dimnames' applied to non-array

#144 aanchalsharma833 opened 3 years ago
0
can i annotate cells in specific cell types?

#143 hansonglee opened 3 years ago
0
How to annotation cluster by singleR 1.2.4

#142 zenghh1226 closed 4 years ago
2
Retrieving a list of marker genes which were used assign cell type labels to clusters

#141 jdd1e16 opened 4 years ago
1
Cell labeling using SingleR in seurat

#140 ruchikabhat opened 4 years ago
1
Minor fixes on lines 33 & paragraph 35

#139 kant opened 4 years ago
0
Seurat object as input and normalization

#138 Diozao666 opened 4 years ago
1
plotDeltaDistribution not found

#137 ghost opened 4 years ago
1
how to create a new reference data set

#136 Shawn10312 opened 4 years ago
4
Adding annotations

#135 AteeqMKhaliq opened 4 years ago
2
can't find any of the functions related to reference data sets

#134 nawazahid opened 4 years ago
1
Download failed

#133 chansigit closed 4 years ago
1
Timeout error

#132 KBoostan opened 4 years ago
2
error in BlueprintEncodeData()

#131 rachelzhu123 opened 4 years ago
1
Function"CreateSinglerSeuratObject" was not found! Where's the way out?

#130 chuanyang-learner opened 4 years ago
1
Updated Bioconductor link

#129 dtm2451 closed 4 years ago
0
SingleR install issue

#128 hi9739 opened 4 years ago
2
About how to construct the trainning data set for building the annotation database of other species

#127 BioAIEvolu opened 4 years ago
1
undefined columns selected

#126 rahulnutron opened 4 years ago
1
SingleR installation error: ‘SingleR’ is not available (for R version 3.6.1)

#125 shintzen closed 4 years ago
1
SingleR web tool

#124 phoebee-h opened 4 years ago
2
Bug in Dataset function HumanPrimaryCellAtlasData()

#123 saisaitian opened 4 years ago
1
Error in use the function SingleR.Subset when reproduce the Figures in paper

#122 duosu closed 5 years ago
0
bug in CreateBigSingleRObject

#121 systemsgenomics opened 5 years ago
1
Applying of Seurat cell-clustering analysis in SingleR

#120 erikfel97 opened 5 years ago
3
The SingleR.PlotTsne error

#119 nanshanjin closed 5 years ago
0
can not download sqlite3 file

#118 BioLaoXu closed 5 years ago
1
fineTuningRound method

#117 xiebb123456 opened 5 years ago
1
Bioconda version of SingleR

#116 hramadas opened 5 years ago
1
Create SingleR object from an existing seurat object

#115 naamama opened 5 years ago
7