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Hi,
I've been running BA3 to estimate migration rates between 2 fish populations but I'm getting some unexpected results.
I used BA3-SNPS and the finetuning script to help set the mixing parameter…
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This is an idea from @robert-haas on a discord channel.
The original moses created combo trees out of the arithmetic ops (plus, minus, times, divide) the boolean ops (and/or/not) and a few others (…
linas updated
2 years ago
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I did some comparisons between the TOPAZ, SMAGs and eukprot genetic material for Florenciella.
To do it I did the following:
- Parse taxonomy files of sMAGs and TOPAZ and extract any MAG that pre…
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There are a number of existing slots/mixins/classes relating to - broadly speaking - phenotypic frequency. Recent discussions suggest room for improvement in their definition, structure and relationsh…
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How can I determine the number of simulation runs that will be executed by nlrx before the completion of all GenAlg runs? When attempting to print nl, the displayed table showed "number of runs calcul…
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Something like
```
def individual_heterozygosity(ts, ind):
ts.pairwise_diversity(ind.nodes)
```
should do it - very simple, but we want to make it easy and natural for people to deal with indi…
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Creating this thread to post potentially useful info about _Pichia pastoris_/_Komagataella phaffii_ that people come across.
Quick background: _Pichia pastoris_ (now named _Komagataella phaffii_) i…
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Hi! I am trying to run accuMUlate in my 64 samples, but it is core-sumping with the following error:
```
$ accuMUlate -c params.ini -b CAN.bam -r ../reference_clean.fasta > putative_mutations.tsv
…
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Hi Xiaoheng,
Thanks for building this fantastic program and making it public! I have an observation regarding the B0maf that I want to confirm with you. That is, B0maf values are positively correla…
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As mentioned in [3436,](https://github.com/opentargets/issues/issues/3436) the credible set page will also contain:
3. Co-loc with GWAS SNPs - scoping in progress
4. Co-loc with QTLs - scoping in …