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We need a github action to rebuild the biosimulator image on release
https://biosimulators.org/simulators/gillespy2/
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The frontend is not able to display the 2D plots defined in the Sedml. This is due to a mismatch between the ids for the outputs of the simulation run as defined in the HDF file and that returned by t…
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Our documentation is currently pinned to release 1.2.0 as seen [here](https://gillespy2.readthedocs.io/en/latest/). This needs to updated to the latest release.
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When using "number_of_trajectories" > 1:
gillespy2.core.results.Results.to_numpy() will return identical numpy arrays.
res_np = results.to_array()
(res_np[0] == res_np[44]).all()
output:True
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Wrede updated
3 years ago
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Examples with COPASI and GillesPy2:
- http://localhost:4200/simulations/60790638e1002d4dbe19ecd0
- http://localhost:4200/simulations/607905bce1002d786f19ecce
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• Name: Hybrid Tau-Leaping Method
• Synonyms: None
• Brief description: A continuously coupled hybrid deterministic/stochastic simulation algorithm for biochemical networks. Biochemical species are …
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---
id: gillespy2
version: 1.5.7
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/e32c312469dbbd20b319de1bf971ae2b37fc61b3/biosimulators.json
specificatio…
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---
id: gillespy2
version: 1.5.7
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/750d8f75795255e773d3c708bd6058fa9ce8539a/biosimulators.json
specificationsPa…
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The timeout event is passed as a signal using os.killpg, however Windows does not have the concept of process groups. So this will need to be done differently on Windows.
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Stack Trace:
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