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StochSS
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GillesPy2
Modeling toolkit for biochemical simulation
http://gillespy2.readthedocs.io/
GNU General Public License v3.0
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SSACSolver freezes until pressing Ctrl+C
#960
maurosilber
opened
1 week ago
0
Fix title
#959
himoto
opened
3 weeks ago
0
Updated copyright and authors and tests
#958
briandrawert
opened
1 month ago
0
Pylint checker fails on forked repos
#957
briandrawert
opened
1 month ago
0
added warning to c++ solvers when variables are specified for non-var…
#956
benblamey
closed
1 month ago
1
variables are silently ignored by non-variable C++ solvers
#955
benblamey
opened
1 month ago
0
http://www.stochss.org/ URL access issue
#954
RichardBruskiewich
opened
2 months ago
0
Time scales
#953
chaoui-mu
closed
4 months ago
2
Error on module.add_event([event])
#952
frascalise
closed
5 months ago
0
Error encountered while running simulation C++ file (return code: 3221225785)
#951
michimiura
closed
1 year ago
2
Mdip/docs hotfix 7/13
#950
mdip226
closed
1 month ago
0
Assignment and Rate Rules, and Events need to be able to target Parameters
#949
briandrawert
closed
1 year ago
1
Mdip226/gillespy2.remote
#948
mdip226
opened
1 year ago
0
Event Assignment: ADD Compartment to valid variable types once implemented
#947
BryanRumsey
opened
1 year ago
0
Component validations
#946
BryanRumsey
closed
1 month ago
1
Assignment rule variable not found when variable is a Parameter
#945
BryanRumsey
opened
1 year ago
1
Updates to CSV
#944
BryanRumsey
closed
1 year ago
0
Model Run Integrator Error
#943
BryanRumsey
closed
1 year ago
0
HOTFIX: Export StochSS Live! Models
#942
BryanRumsey
closed
1 year ago
0
Fixes issues where "lambda" is used as a species or parameter
#941
briandrawert
closed
1 year ago
0
SBML import fails if MathML includes reserved Python words
#940
leon9812
closed
1 year ago
0
GillesPy2 C extension
#939
jtcooper10
closed
1 month ago
1
Tau hybrid solvers c++ python need argument tau step
#938
briandrawert
closed
1 year ago
0
HOTFIX: SBML Dependent Parameter Expressions
#937
BryanRumsey
closed
1 year ago
0
Unable to import SBM files with Dependent variables
#936
TorkelE
closed
1 year ago
2
Problem installing gillespy2
#935
lilt3ddy
closed
1 year ago
2
Tau hybrid solvers c++ python need argument tau step
#934
briandrawert
closed
1 year ago
0
Timespans are not correctly converted to StochSS
#933
BryanRumsey
closed
1 year ago
0
Model.run needs to error if integrator is passed as arg
#932
BryanRumsey
closed
1 year ago
0
1.8.2 Release
#931
BryanRumsey
closed
1 year ago
0
check python typing in template_gen.py
#930
seanebum
opened
1 year ago
0
Remove references to StochKit
#929
briandrawert
closed
1 year ago
0
Fix ssa c dependency graph
#928
seanebum
closed
1 year ago
0
Unexpectedly slow simulation with zvode
#927
TorkelE
opened
1 year ago
3
Bug
#926
mdip226
closed
1 year ago
0
SSACSolver does not simulate custom propensities correctly
#925
briandrawert
closed
1 year ago
1
Fix C++ dependency warning
#924
jtcooper10
closed
1 year ago
1
Need to update the C++ dependency check to scheck for SCons instead of Make
#923
jtcooper10
closed
1 year ago
0
Copyright Update
#922
BryanRumsey
closed
1 year ago
0
Release 1.8.1
#921
BryanRumsey
closed
1 year ago
0
Fix tests
#920
briandrawert
closed
1 year ago
0
test modules uncommented
#919
briandrawert
closed
1 year ago
0
SSACSolver simulates the telegraph model incorrectly
#918
briandrawert
closed
1 year ago
1
SSACSolver simulates the telegraph model incorrectly
#917
briandrawert
closed
1 year ago
2
HOTFIX: Notebook Plotting
#916
BryanRumsey
closed
1 year ago
0
Notebook plot display using plotly fails
#915
BryanRumsey
closed
1 year ago
0
Cleanup Compiler Warning Messages
#914
briandrawert
closed
1 year ago
1
TauHybridSolver: using pop() instead of reallocating array
#913
briandrawert
closed
1 year ago
0
In TauHybrid Python solver, savetimes vector should pop() not slice
#912
briandrawert
closed
1 year ago
0
Cleanup C++ compiler warnings
#911
briandrawert
closed
1 year ago
0
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