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### Describe the problem
Hello!
I'm trying to change the copy to clipboard image and following the instructions here (https://sphinx-copybutton.readthedocs.io/en/latest/) but am unable to chang…
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I was wondering if the following proposal is worth a discussion. I am fully sold on `UMAP` being conceived as a dimensionality reduction algorithm, whose effectiveness is a function in large part of t…
ulupo updated
4 years ago
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Hi @gcyuan @bernard2012 @wwang-chcn @RubD @pacificma , thanks for your contribution to Giotto and Binspect! I used Binspect-rank to analyze the spatially variable genes in my spatial data (~40000 cell…
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First of all thank you for this tool!
I have a question regarding the function SeuratToGiotto(). I got a SeuratObject from one of my colleagues and it has already 12 samples integrated. Basic info…
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Thanks for your great work. I got an issue during deconvolution.
Error in enrich_matrix[, ct_spot_k[m]] : subscript out of bounds
In addition: Warning messages:
1: In sparseMatrix(i = indices[] +…
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Dear Developers,
I'm running the "doHMRF" function on the Giotto-provided CODEX spleen dataset in the Docker environment (Win10 system). But I got an error "segmentation faults" after running 1 min…
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If I run the following, everything looks ok - image is plotted.
```
library(Giotto)
go sessionInfo()
R version 4.1.0 (2021-05-18)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under:…
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Hi, thanks for the brilliant tool.
However I found some bugs in the function spatCellCellcom().
It always says " 'Delaunay_network' is not an existing spatial network" when I run the function thoug…
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Hi, excited to start using this package! I am trying to covert a seurat object to a giotto object for an analysis of pre-processed visium data. I tried using the `seuratToGiotto()` function and receiv…
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Dear all,
I am trying to load the Giotto object from CosMx website (https://nanostring-public-share.s3.us-west-2.amazonaws.com/SMI-Compressed/SMI-ReadMe.html). I have downloaded the file, which is …