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There are many cases where test parameters are used that are not defined in the inputs.
I guess most cases are easy to solve, but may require a bit of research:
- check if the parameter was th…
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Hi,
I want to get loop aggregate plots using 'fanc aggregate'. But I got an unsolved problem. Here is the running command and error message:
`fanc aggregate -p test.png --loops ${cool_matrix} t…
AIBio updated
2 years ago
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There are many tools that have select parameters with duplicated values or names, which probably needs to be fixes. It would be interesting to see if there are valid cases among those.
In addition …
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In order to take full advantage of MultiQC's aggregation report, it needs to find consistent sample names across various datasets. Thus, whenever possible, MultiQC should be using `element_identifier`…
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Hi,
So this is a very minor issue that is probably more on the user side, but it seemed to be worth writing up as an issue in case others run into it. I've been working on generating a contact map o…
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Hi author:
The diffDomain is a useful tool. But there seems to be something strange about my results, all the TADs have no p-values, is it possible that the input file should provide the original …
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Dear developers,
I am glad and thankful for your tool for Hi-C Data Analysis! I have a question regarding the beginning of the analyses.
Do I need to process my .fastq files to remove the reads …
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The overall idea is to allow toggling between the 'cells' view (umap/tsne) with a 'genes' view (heatmap probably) so that cellxgene users can get a sense of the overall shape of the dataset from a gen…
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We support a Contribution Annotation Framework that allows us to indicate roles of conributors. However, many tutorials still use the "old" style contribution metadata (without roles)
Updating this…