vaquerizaslab fanc issues

vaquerizaslab / fanc

FAN-C: Framework for the ANalysis of C-like data

GNU General Public License v3.0

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issues

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How to calculate the loop strength of APA plot ?

#199 nieyage opened 1 month ago
1
fanc loops error with .mcool file

#198 wangmhan opened 2 months ago
0
Merging pairs files from biological replicate

#197 Knetsy opened 2 months ago
0
illegal hardware instruction fanc –version

#196 hd931 opened 3 months ago
0
The command fanc compartments -r 5 encountered an error

#195 LHXqwq opened 3 months ago
0
How to do plotting.TriangularMatrixPlot without ice balancing

#194 WenfanKK opened 3 months ago
1
Wrong name for parameter ylim

#193 joshuak94 opened 4 months ago
0
Specific package versions for matplotlib and pandas?

#192 joshuak94 opened 5 months ago
1
Fanc insulation hangs?

#191 gdolsten opened 5 months ago
0
Statistical methods employed comparing insulation scores

#190 luzporras opened 6 months ago
1
Load .insulation file (File type not recognised)

#189 Nicolas-Py opened 6 months ago
0
Problem with fanc auto

#188 CStehn opened 6 months ago
0
Is it possible A/B compartment analysis entire genome

#187 13061994 opened 6 months ago
0
cooler version difference in parameters

#186 NMaziak opened 7 months ago
2
fancplot layer: AttributeError: 'Bed' object has no attribute '_parameters'

#185 jmsanper opened 7 months ago
1
hic files format after the fanc auto pipeline

#184 Knetsy closed 8 months ago
1
fanc boundaries: AttributeError: 'Bed' object has no attribute 'close'

#183 prometheusloong opened 8 months ago
2
Issue with installation

#182 rlowe-altoslabs opened 8 months ago
2
is it SAM/BAM format?

#181 gorliver opened 9 months ago
0
Per chromosome compartment strength with different eigenvectors

#180 nponts opened 9 months ago
2
'Figure' object has no attribute 'draw_without_rendering'

#179 AlcaArctica closed 10 months ago
2
Issue with fancplot

#178 TomSexton00 opened 11 months ago
4
How to retrieve and save the compartment domain and values in python API

#177 caragraduate opened 11 months ago
1
Handling 4DN .mcool files

#176 wangfuzhou110 opened 11 months ago
0
fanc compare return invalid value encountered in double_scalars

#175 BenxiaHu opened 11 months ago
0
Issue with log transformation in `fancplot -p square`

#174 kalavattam opened 1 year ago
0
Guidance on identifying and masking specific bins before balancing using FAN-C Python API

#173 kalavattam opened 1 year ago
0
auto.py index out of range

#172 alphataubio closed 3 months ago
1
Clarification on matrix weights, scaling, and visualization in the context of `fanc compare`

#171 kalavattam closed 1 year ago
3
Problem with `region` in `fanc/bin/fancplot`

#170 kalavattam closed 1 year ago
3
WARNING Cannot find normalisation 'XXX'

#169 moxqiang opened 1 year ago
3
Runtime Error ("Task {} had non-zero exit status.") error with fanc auto

#168 crxbun closed 1 year ago
10
fanc load for customized .hic file

#167 caragraduate opened 1 year ago
3
ValueError: not enough values to unpack

#166 nieyage closed 1 year ago
1
Bias vector

#165 nponts closed 1 year ago
5
Cleaning by removing 'Dangling ends' fragments only?

#164 yermek2030 opened 1 year ago
7
Duplicated rows in the TAD boundary file given by fac boundaries

#163 ziyin96 opened 1 year ago
4
Dispersed bin squares in Saddle plots for individual chromosomes

#162 yermek2030 opened 1 year ago
6
TestReadPairs.test_select fails

#161 rekado opened 1 year ago
0
fanc aggregate data

#160 shinohara-xiao opened 1 year ago
2
fanc auto ERROR: bowtie2 must be in PATH or defined on config file for mapping!

#159 shinohara-xiao opened 1 year ago
1
whole genome matrix

#158 LindaJadeC closed 1 year ago
0
About fanc insulation command

#157 GleeenSIBS opened 1 year ago
0
About output of observed/expected matrix value

#156 GleeenSIBS closed 1 year ago
2
fancplot / -region parameter : KeyError

#155 matteozoia4 opened 1 year ago
8
fanc map multi-threads and memory issue

#154 xunchen85 closed 1 year ago
4
missing reads region has valid insulation score

#153 caragraduate opened 1 year ago
4
FANC aggregate generates weird results

#152 wangfuzhou110 closed 11 months ago
1
unpack requires a buffer of 4 bytes

#151 LMH0066 closed 1 year ago
6
Flaky TestReadPairs.test_filter_inward test

#150 Apteryks opened 1 year ago
0