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Thank you for making this data available.
I have stumbled upon an unexpected behavior: for the organ "blood", the cell labels provided do not fit the clusters as seen on a UMAP:
[
![label_umap]…
goepp updated
2 months ago
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Hi, I have a simple question about the example of loading the gene score information prior application:
```
# load adata
adata = sc.read_h5ad("data/expr.h5ad")
# subset gene sets
df_gs = pd.r…
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Sprite strips/sheets are more widely supported than APNG files by game engines. I haven't even been able to find a tool to convert APNG to a strip. ~~Ideally, there could be a menu toggle for "Export …
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It looks like you are not looking into logfiles of datasets to understand why some records from input/download files are filtered out. Please do not forget to so -- and put that in the backend documen…
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Minimal example:
Current text:
Terms in ASCT+B tables are in red. Panel A shows the indirect relationship between 'descending loop of Henle' and 'nephron tubule' in Uberon. Panel B shows the…
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### Setup
I am reporting a problem with GSEApy version, Python version, and operating
system as follows:
```
3.8.17 | packaged by conda-forge | (default, Jun 16 2023, 07:06:00)
[GCC 11.4.0…
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If we wanted to assert that some specimen overlaps two anatomical regions, how would we do this?
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Apologies if I am misconstruing something here, but it seems there is a lot of effort going on here to duplicate ontologies that exist in the OBO library -- ontologies that are widely in use for major…
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If you dig in their github repository you will likely find the data already summarised for you in form of R script for reproducibility, so you have to avoid the 95% of work in getting raw single-cell …
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Based on @emquardokus's feedback from https://github.com/hubmapconsortium/antibody-api/issues/166#issuecomment-2083037998
>It would also be great to have an introduction to what the AVR website is …