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martinjzhang
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scDRS
Single-cell disease relevance score (scDRS)
https://martinjzhang.github.io/scDRS/
MIT License
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use scdrs in a tissue seemlingly unrelated with the disease
#92
Davidseye
closed
1 week ago
4
tcell.facs.annot.h5ad without GENE name
#91
Davidseye
closed
1 week ago
2
Preprocessing: killed running scdrs compute-score
#90
schroeme
closed
3 weeks ago
4
Converting GWAS catalog .tsv file to gene set
#89
kayihui
closed
1 week ago
3
ValueError: too many values to unpack (expected 2)
#88
kayihui
closed
1 month ago
8
Using geneset from SMR result
#87
Misaka-15134
closed
1 week ago
1
Interpreting scDRS score when comparing cell-type subclusters
#86
HyeonbinJoHCho
opened
1 month ago
1
Issue83
#85
martinjzhang
closed
2 months ago
0
The 'n_fdr_0.2' number of all group is 0
#84
Y-Isaac
closed
2 months ago
7
AssertionError when running quick test after installation
#83
hoholee
closed
2 months ago
7
trait=z_score: skipped due to small size (n_gene=5, sys_time=116.1s)
#82
Lualululu
closed
2 months ago
1
TypeError: plot_group_stats() got an unexpected keyword argument 'plot_kws'
#81
Huiflorazhan
closed
1 week ago
16
Is it reasonable to use human' geneset on mouse scRNAseq data?
#80
zehualilab
closed
5 months ago
2
About compute-score
#79
evenDDDDD
closed
5 months ago
0
TypeError: '<' not supported between instances of 'str' and 'float'
#78
zehualilab
closed
6 months ago
3
Subsetting cells for downstream analysis.
#77
jeji0209
closed
6 months ago
1
fixed the bug in scdrs/util.py
#76
yyoshiaki
closed
7 months ago
2
add option for specifying FDR threshold in plot_group_stats
#75
KangchengHou
closed
7 months ago
3
The graphs from a single result and multiple results are inconsistent
#74
QianChwnLyn
closed
2 months ago
13
custom gene set ?
#73
zhangpicb
closed
7 months ago
2
compute-score is not reading .gs file properly
#72
juliaapolonio
closed
8 months ago
2
Gene weights or without gene weights
#71
QianChwnLyn
closed
2 months ago
3
Update dependencies of scDRS
#70
martinjzhang
opened
9 months ago
0
gene weights for the control genes
#69
aandreas13
closed
9 months ago
5
Issues Plotting UMAP from quick start tutorial
#68
NaomiHuntley
closed
9 months ago
1
error metaclass conflict
#67
jhong26
closed
9 months ago
1
turning off fdr correction
#66
milospjanic
closed
9 months ago
1
plot_group_stats() got an unexpected keyword argument 'plot_kws'
#65
milospjanic
closed
1 year ago
15
perform-downstream outputs zero significant cells
#64
gwentea
closed
9 months ago
1
scRNA data input
#63
frucelee
closed
1 year ago
6
Error in scdrs perform-downstream --group-analysis
#62
jiawei-zhong
closed
9 months ago
4
munge-gs input format
#61
DonaldSandoz2000
closed
1 year ago
2
Remove NA values in corr anlaysis
#60
martinjzhang
opened
1 year ago
0
Convert Seurat object to h5ad file
#59
uqzqiao
opened
1 year ago
12
update doc: clatify raw p-val; procedure to increase MC samples in gr…
#58
martinjzhang
closed
1 year ago
0
scdrs compute-score output
#57
NaomiHuntley
closed
1 year ago
4
Please help with scDRS for the plant Arabidopsis thaliana
#56
bitcometz
closed
1 year ago
15
Update compute_magma_gs.md
#55
KangchengHou
closed
1 year ago
0
"skipped due to small size" error
#54
NaomiHuntley
closed
1 year ago
9
Issue52
#53
martinjzhang
closed
1 year ago
0
Error when adata.obs_names can be interpreted as integers
#52
daxxio
closed
1 year ago
2
Considerations for single cell splicing data
#51
dbogdano
opened
1 year ago
2
tutorial-Quick start ——full_score.gz
#50
zhouxilala
closed
1 year ago
1
GWAS traits and a control traits
#49
Li-mengjie
closed
1 year ago
12
Adjusting for donor effects
#48
Ararder
closed
1 year ago
1
Multiple testing correction on downstream analysis
#47
aandreas13
closed
1 year ago
2
compute-score can not complete
#46
Dan-121
closed
1 year ago
7
scdrs CLI not working?
#45
Dzhan4
closed
1 year ago
3
Seurat to h5ad
#44
Dzhan4
closed
1 year ago
7
Cell-type disease association vs proportion of significant cells
#43
DanielYuhangLi
closed
1 year ago
2
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