martinjzhang scDRS issues

martinjzhang / scDRS

Single-cell disease relevance score (scDRS)

https://martinjzhang.github.io/scDRS/

MIT License

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issues

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Downstream Analysis - invalid value encountered in scalar divide

#110 NaomiHuntley opened 1 day ago
1
Can scDRS be used for snRNA-seq or scATAC-seq data?

#109 adobe7105 opened 2 weeks ago
1
scDRS Parameter: Setting --flag-return-ctrl-norm-score True ？

#108 looppy95 closed 2 weeks ago
1
Identical assoc_mcp in results

#107 auesro opened 3 weeks ago
9
Replace np.float_ with np.float64

#106 mkanai closed 1 month ago
2
Problem with applying gene-disease association from TWAS result

#105 Stray357 closed 1 month ago
2
Sig. cell type-disease associations and Sig. individual cells

#104 hopehan12 closed 2 months ago
3
About the H5AD input - raw counts or normalized+transformed?

#103 hopehan12 closed 2 months ago
2
Why are some of the CORR columns in the <trait>.scdrs_gene file negative, and the largest RANK level is the smallest negative number, can this represent the gene most associated with disease and cell type?

#102 MoWeiLanChen closed 2 months ago
1
scdrs perform-downstream: fail to load scDRS full score gz file

#101 hopehan12 closed 2 months ago
2
Questions about reproducing results

#100 HelloWorldLTY closed 3 months ago
10
The relationship between cell type association and heterogeneity

#99 AI-10 opened 3 months ago
1
Questions about example dataset usage

#98 HelloWorldLTY closed 3 months ago
2
Issue with plot using scdrs.util.plot_group_stats

#97 NaomiHuntley closed 2 months ago
2
Update index.rst to fix a bug in the installation process

#96 HelloWorldLTY closed 3 months ago
2
Questions about matched gene sets

#95 HelloWorldLTY closed 3 months ago
2
Correcting cell-level p-values for multiple comparisons?

#94 schroeme opened 3 months ago
3
fail to get the "1000 top associated genes" based on MAGMA

#93 yihancc closed 3 months ago
2
use scdrs in a tissue seemlingly unrelated with the disease

#92 Davidseye closed 4 months ago
7
tcell.facs.annot.h5ad without GENE name

#91 Davidseye closed 4 months ago
2
Preprocessing: killed running scdrs compute-score

#90 schroeme closed 5 months ago
4
Converting GWAS catalog .tsv file to gene set

#89 kayihui closed 4 months ago
3
ValueError: too many values to unpack (expected 2)

#88 kayihui closed 5 months ago
8
Using geneset from SMR result

#87 Misaka-15134 closed 4 months ago
1
Interpreting scDRS score when comparing cell-type subclusters

#86 HyeonbinJoHCho opened 6 months ago
1
Issue83

#85 martinjzhang closed 7 months ago
0
The 'n_fdr_0.2' number of all group is 0

#84 Y-Isaac closed 6 months ago
7
AssertionError when running quick test after installation

#83 hoholee closed 7 months ago
7
trait=z_score: skipped due to small size (n_gene=5, sys_time=116.1s)

#82 Lualululu closed 7 months ago
1
TypeError: plot_group_stats() got an unexpected keyword argument 'plot_kws'

#81 Huiflorazhan closed 4 months ago
16
Is it reasonable to use human' geneset on mouse scRNAseq data?

#80 zehualilab closed 10 months ago
2
About compute-score

#79 evenDDDDD closed 10 months ago
0
TypeError: '<' not supported between instances of 'str' and 'float'

#78 zehualilab closed 10 months ago
3
Subsetting cells for downstream analysis.

#77 jeji0209 closed 11 months ago
1
fixed the bug in scdrs/util.py

#76 yyoshiaki closed 11 months ago
2
add option for specifying FDR threshold in plot_group_stats

#75 KangchengHou closed 12 months ago
3
The graphs from a single result and multiple results are inconsistent

#74 QianChwnLyn closed 7 months ago
13
custom gene set ?

#73 zhangpicb closed 1 year ago
2
compute-score is not reading .gs file properly

#72 juliaapolonio closed 1 year ago
2
Gene weights or without gene weights

#71 QianChwnLyn closed 7 months ago
3
Update dependencies of scDRS

#70 martinjzhang opened 1 year ago
0
gene weights for the control genes

#69 aandreas13 closed 1 year ago
5
Issues Plotting UMAP from quick start tutorial

#68 NaomiHuntley closed 1 year ago
1
error metaclass conflict

#67 jhong26 closed 1 year ago
1
turning off fdr correction

#66 milospjanic closed 1 year ago
1
plot_group_stats() got an unexpected keyword argument 'plot_kws'

#65 milospjanic closed 1 year ago
15
perform-downstream outputs zero significant cells

#64 gwentea closed 1 year ago
1
scRNA data input

#63 frucelee closed 1 year ago
6
Error in scdrs perform-downstream --group-analysis

#62 jiawei-zhong closed 1 year ago
4
munge-gs input format

#61 DonaldSandoz2000 closed 1 year ago
2