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I am trying to run 3D Denoising (Tribolium) in Fiji on Windows 10 x64. It works fine (actually works beautifully) on a small dataset (500 x 900 x 45, 16-bit, 39 MB), but fails on a much larger one (12…
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@tpietzsch
My idea is to rewrite the whole `TransformedBox` (https://github.com/bigdataviewer/bigdataviewer-core/blob/master/src/main/java/bdv/tools/boundingbox/TransformedBoxOverlay.java) framework …
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```
Cannot display tissue in BVV, incompatible data type:
net.imglib2.type.numeric.integer.ShortType
```
Reproduce:
- Open PlatyBrowser
- Choose `tissue` segmentation (same drop-down as `cel…
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The JVM's default max heap varies by OpenJDK version, but is typically rather small compared to the size of memory on a computer. For example, I ran out of memory trying to perform a `filter.gauss` op…
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The code here:
https://github.com/imglib/imglib2/blob/7e37c9b10cc044a4951902116703f1faa7dc1c78/src/main/java/net/imglib2/util/ImgUtil.java#L318
... is very clean and simple, but it's missing a c…
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**Describe the bug**
`LoopBuilder` is the ImgLib2 way to achieve chunked multithreading, see this for an example (specifically, the 'squared sum' example)
https://forum.image.sc/t/imglib2-split-imag…
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I know jrun is primarily for running java, but it strikes me as being a possibly remarkably simple dependency manager. (groovy, gradle, ant, maven all seem quite complex)
This request is not withou…
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@tpietzsch @bogovicj
Within the class `RealTransformUnaryCompositeRealMaskRealInterval` I found this issue:
As you can see in the lower part of the screenshot `this` and `obj` are in fact th…
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That would be nice to have an interval parameter such as in `Line.getInterpolatedPolygon()` (https://github.com/imagej/ImageJA/blob/master/src/main/java/ij/gui/Roi.java#L439) in `ROIUtils.bresenham()`…
hadim updated
2 years ago
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3D_Viewer is problematic these days, but sometimes still does the job and is a dependency for a number of plugins.
- [ClearVolume](https://github.com/ClearVolume/ClearVolume) is great, but doesn'…