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**Describe the bug**
Running the example described in the README with the provided example data fails.
**To Reproduce**
Steps to reproduce the behavior:
1. Loaded the IceR with `library(IceR)`
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I am working on conducting an annual simulation of global atmospheric C2H6 and I am attempting to import additional emission inventories into HEMCO--which I believe is causing my runs to crash prematu…
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Running the container with singularity on the test data after modifying the parameter.txt file for ADAP results in errors on both a linux workstation and a computing cluster - see attached adap.log fi…
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When creating a custom rapport I'd like to export the Total_208Pb232Th ratio. Looking at the expression used to calculate the ratio the resultant is a 204corrected ratio, is there an uncorrected ratio…
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Before we can have complex geometry and physics models added to AdePT, we need to add their dependencies. Material information is required both to describe detector geometry and to fetch and/or calcu…
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For a while I think I was getting away with calling xcmsSets, but I think there has been a relatively recent shift to not allowing xcmsSet at all. I had XCMS3_Proprocessing.Rmd working last summer (th…
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Good day,
I am running Reporter-0.7.15 on a server and I have installed it on each computer node, so all should be running fine. According the the info page in cmd line for Reporter the input optio…
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I am running Philosopher on a set of TMT10-MS3 proteomic samples from a single experiment. I have augmented my human proteome reference FASTA with custom sequences (I generated decoys for all sequence…
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Dear SearchGUI developers,
after I updated SearchGUI to version 4.0.29 and PeptideShaker to ver 2.0.21, I got the error message "Overflow detected." right after starting the search (direct in Import…
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## Description of bug / unexpected behavior
trying to set up logging in a config file fails
## Expected behavior
logs written to a file
## How to reproduce the issue
Code for reproduci…