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The following is the list of instructions which we currently disassemble and lift (Fully or Partially). If you have any instructions which differ from this table, there is likely a bug or a documentat…
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Hi,
I'm trying to analyse my data os FBS on the fragpipe analist. I did my own reports with the last samples but im trying today with other sample (another output) and I cant do the LFQ of the pepti…
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Log File:
[log_2024-07-18_12-11-55.txt](https://github.com/user-attachments/files/16283451/log_2024-07-18_12-11-55.txt)
Hello FragPipe team,
I loaded the LFQ-phospho workflow and I am trying…
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Thanks for publishing the code! Great work, very inspired!!
As you regard MAGVIT(v1) as a baseline in the experiment, have you considered doing VQ with LFQ (replacing VQGAN), which is used in MAGVIT-…
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**Describe the bug**
The result files are written in combined/txt folder but they are empty
```
-rw-rw-r-- 1 ash022 nn9036k 0 Aug 3 12:29 summary.txt
-rw-rw-r-- 1 ash022 nn9036k 3.7K Aug 3 …
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Dear Vadim,
The background is as follows: I am using a custom FASTA database, which is similar to the uniprot format, but has not annotated, with only sequence IDs and missing protein names and gen…
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Step to reproduce :
```bash
./nextflow run main.nf --raws "../../data/*.raw" --fasta "../../data/*.fasta" --precursor_mass_tolerance 10.0 --fragment_mass_tolerance 0.5 --miscleavages 2 --variable_mo…
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```kotlin
fun addLast(element: E): Int {
_state.loop { state ->
if (state and (FROZEN_MASK or CLOSED_MASK) != 0L) return state.addFailReason() // cannot add
state.w…
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Hello,
The "clipped by progress" option for models in progress bars in currently not working. It is clearly visible in the screenshot.
![WoWScrnShot_053121_174329](https://user-images.githubusercon…
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Hello
Thank you for making this wonderful tool. I am a newbie and I was hoping you could help me with few queries so that I can quickly start the proper analysis.
1) What does the maxLFQ minimim…