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Hello everyone
I have experience analysing suspension mass cytometry data using CATALYST. Now I'm trying to use the same pipeline to analyse imaging mass cytometry data which, after segmentation, I…
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Dear UnMicst developers,
I am trying to run MCMICRO for images taken by my collaborators. I have tried many different settings but unfortunately the pipeline runs into errors. By checking the _qc_ …
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
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Hello CATALYST team
I am trying to construct a sce object from a matrix which has thousands of cells in rows and markers plus clustering, umap coordinates and metadata in columns.
I managed to d…
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We have an immediate need for two cell gating terms. I've reserved IDs for them, but I know that this is not a complete term request.
- OBI:0002776 automatic cell gating
- OBI:0002777 manual cell …
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Dear developer,
That's a great pipleline for IMC analysis, but I am wondering where to download the example data- these mcd files
The link below leads to a pdf pipeline only.
"This pipeline was …
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This affects a tranche of Florida TMC data including HBM387.XZWR.467
> @Joel Welling @Chris Briggs Those new IMC datasets are 3D IMC (metadata schema:
> https://hubmapconsortium.github.io/ingest…
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https://mp.weixin.qq.com/s/9TZfhoTyL8Xxh_-XCWTCxw
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/SWKSId89J6UIcP7tzErkzA
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/64P-lHNA5L4kCF10NMrRog
ixxmu updated
2 years ago