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hubmapconsortium
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ingest-pipeline
Data ingest pipeline(s) for QA/metadata etl/post-processing
MIT License
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Bump pas-ftu-segmentation-pipeline submodule to v1.2.0
#982
mruffalo
opened
1 week ago
0
Bugfix: parsing new response from rules engine
#981
sunset666
opened
1 week ago
0
Bump multiome-rna-atac-pipeline to v1.2.1
#980
mruffalo
opened
1 week ago
0
General: Initial changes to add addt'l metadata to the dag provenance…
#979
jpuerto-psc
opened
2 weeks ago
0
Update requirements.txt
#978
jpuerto-psc
closed
2 weeks ago
0
Bugfix unsupported parameter for pipeline
#977
sunset666
closed
2 weeks ago
0
Bump IVT IVTests
#976
sunset666
closed
2 weeks ago
0
Add 3D IMC segmentation
#975
mruffalo
opened
3 weeks ago
0
Bump deepcelltypes submodule to v1.0.4
#974
mruffalo
opened
3 weeks ago
0
Bump IVT v0.0.28
#973
sunset666
closed
3 weeks ago
0
Bump sprm submodule to v1.4.9.1
#972
mruffalo
opened
3 weeks ago
0
Jpuerto/segmask pyramids
#971
jpuerto-psc
closed
2 weeks ago
0
Azimuth re-annotation DAG update
#970
sunset666
closed
3 weeks ago
0
Bump deepcelltypes submodule to v1.0.3
#969
mruffalo
closed
1 week ago
0
Bump sprm submodule to v1.4.9
#968
mruffalo
closed
3 weeks ago
0
Add Kaggle 2 module
#967
mruffalo
opened
3 weeks ago
0
Pass thread count to CWL
#966
jswelling
closed
3 weeks ago
0
Bugfix: casting uuid as a list for downstream processing.
#965
sunset666
closed
1 month ago
0
Bugfix: dag provenance recalculation for multiome
#964
sunset666
closed
1 month ago
0
Bugfix: cwlworkflow calculations for multiome datasets
#963
sunset666
closed
1 month ago
0
Bugfix: Wrong cwl_workflow to calculate files for multiome reannotation
#962
sunset666
closed
1 month ago
0
Mapping Changes for Seg Masks
#961
jpuerto-psc
closed
1 month ago
0
Bugfix: TyPo on new attribute to move data step
#960
sunset666
closed
1 month ago
0
Bugfix wrong trigger rule for new forks
#959
sunset666
closed
1 month ago
0
Bugfix: wrong task_id call
#958
sunset666
closed
1 month ago
0
Bump IVTests v1.1.0
#957
sunset666
closed
1 month ago
0
bugfix wrong value for bailout step
#956
sunset666
closed
1 month ago
0
Bump epic-obj-csv-to-mudata submodule to v0.2
#955
mruffalo
closed
1 month ago
0
Bugfix typo in step reference
#954
sunset666
closed
1 month ago
0
Re-Annotation DAG update to support multiome UI processing
#953
sunset666
closed
1 month ago
0
Bump azimuth-annotate
#952
sunset666
closed
1 month ago
0
DAG: Modify pas_ftu pipeline to run image pyramid for the primary raw…
#951
jpuerto-psc
closed
1 month ago
0
DAG: Modify to always copy the metadata from the original dataset.
#950
jpuerto-psc
closed
1 month ago
0
DAG: xcom does not accept functions
#949
jpuerto-psc
closed
1 month ago
0
Bump IVT v0.0.27
#948
sunset666
closed
1 month ago
0
Bump azimuth-annotate
#947
sunset666
closed
1 month ago
0
Jpuerto/mudata dag
#946
jpuerto-psc
closed
1 month ago
0
Shared Upload: use pd.isna rather than math.isnan
#945
jpuerto-psc
closed
1 month ago
0
Error counts
#944
gesinaphillips
closed
1 month ago
0
Update portal-containers
#943
tkakar
closed
1 month ago
0
Jpuerto/mudata dag
#942
jpuerto-psc
closed
1 month ago
0
Bugfix wrong secondary_analysys for multiome
#941
sunset666
closed
1 month ago
0
Bugfix static matrix parameter to dynamic
#940
sunset666
closed
1 month ago
0
Bugfix missing data path to source annotations for datasets in QA
#939
sunset666
closed
1 month ago
0
Bugix datatype error
#938
sunset666
closed
1 month ago
0
Bugfix missing multiome_snareseq assay for re-annotations
#937
sunset666
closed
1 month ago
0
Bump Azimuth
#936
sunset666
closed
1 month ago
0
Bump salmon-rnaseq to v2.3.0
#935
SFD5311
closed
1 month ago
0
Bump salmon-rnaseq v2.2.9
#934
sunset666
closed
1 month ago
0
Sfd5311/multiome snareseq fix
#933
SFD5311
closed
4 weeks ago
0
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