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hubmapconsortium
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ingest-pipeline
Data ingest pipeline(s) for QA/metadata etl/post-processing
MIT License
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Centralized parameter relax-path-checks
#932
sunset666
closed
2 months ago
0
Bump deepcelltypes to v1.0.2
#931
mruffalo
closed
3 weeks ago
0
Passing higher level paths for img_dir and metadata_dir arguments
#930
SFD5311
closed
2 months ago
0
Passing higher level paths for img_dir and metadata_dir parameters
#929
SFD5311
closed
2 months ago
0
Sfd5311/alignment json
#928
SFD5311
opened
2 months ago
0
SPRM v1.4.5
#927
mruffalo
closed
3 weeks ago
0
Bump sc-atac-seq-pipeline to 2.1.9
#926
pennycuda
closed
2 months ago
0
Update atac-seq to v2.1.8
#925
pennycuda
closed
2 months ago
0
bumped ivt version to v0.0.25
#924
gesinaphillips
closed
2 months ago
0
Bump atac-seq to v2.1.7
#923
pennycuda
closed
2 months ago
0
auto_deploy enhancement
#922
sunset666
closed
2 months ago
0
bumping IVT to v0.0.24
#921
gesinaphillips
closed
3 months ago
0
Bumping multiome-rna-atac-pipeline to v1.1.9
#920
SFD5311
closed
3 months ago
0
Sfd5311/add visium probes dag
#919
SFD5311
closed
3 months ago
0
Add `--data_dir` to CODEX second stitching
#918
mruffalo
opened
3 months ago
0
Bump sprm submodule to v1.4.4
#917
mruffalo
closed
2 months ago
0
Add epic-obj-csv-to-mudata submodule
#916
mruffalo
closed
3 months ago
0
Bump phenocycler-pipeline to v1.0.2
#915
mruffalo
closed
3 months ago
0
Bump multiome-rna-atac-pipeline to v1.1.8
#914
SFD5311
closed
3 months ago
0
Bump CODEX to 2.6.1
#913
pennycuda
closed
3 months ago
0
Syncing bugfix for organism paramenter in visium pipeline
#912
sunset666
closed
3 months ago
0
Sfd5311/multiome qc
#911
SFD5311
closed
3 months ago
0
General: Update assay_type to phenocycler to match the output from th…
#910
jpuerto-psc
closed
4 months ago
0
Bump phenocycler-pipeline submodule to v1.0.1
#909
mruffalo
closed
4 months ago
0
Add phenocycler-pipeline at v1.0
#908
mruffalo
closed
4 months ago
0
CODEX DAG bugfix for standalone steps
#907
sunset666
closed
4 months ago
0
Bump ingest-validation-tools v1.0.1
#906
sunset666
closed
4 months ago
0
Add deepcelltypes repository, workflow steps
#905
mruffalo
closed
4 months ago
0
Bumping multiome-rna-atac-pipeline version to v1.1.6
#904
SFD5311
closed
4 months ago
0
Sfd5311/multiome version bump
#903
SFD5311
closed
4 months ago
0
Removing TypeClient references
#902
sunset666
closed
4 months ago
0
EPICs reorganization
#901
sunset666
closed
1 month ago
0
Bugfix missing token
#900
sunset666
closed
4 months ago
0
Removing old bdbag DAG
#899
sunset666
closed
4 months ago
0
DAG to find and change file extensions, defaults to TIF -> TIFF
#898
gesinaphillips
closed
4 months ago
0
Bug fix new token requirement
#897
sunset666
closed
4 months ago
0
Bump salmon-rnaseq submodule to v2.2.6
#896
sunset666
closed
4 months ago
0
Bump salmon-rnaseq submodule to v2.2.6
#895
mruffalo
closed
4 months ago
0
StatusChanger bugfix for None status
#894
gesinaphillips
closed
4 months ago
0
Upstream syncing
#893
sunset666
closed
4 months ago
0
Welling/state add mouse
#892
jswelling
closed
4 months ago
1
Sfd5311/murine rna support
#891
SFD5311
closed
4 months ago
0
Release v3.4
#890
jpuerto-psc
closed
5 months ago
0
Submodules: Bump IVTools to v0.0.22
#889
jpuerto-psc
closed
5 months ago
0
S&C: Add check to make sure that the destination path does not yet ex…
#888
jpuerto-psc
closed
5 months ago
0
Bumping salmon-rnaseq version to 2.2.4
#887
SFD5311
closed
5 months ago
0
Bump scikit-learn from 0.22 to 1.5.0 in /src/ingest-pipeline/airflow/dags/cwl/obsolete/salmon_rnaseq_10x/scanpy-analysis
#886
dependabot[bot]
opened
5 months ago
0
Updated resource_map
#885
sunset666
closed
5 months ago
0
Bump authlib from 0.15.6 to 1.3.1 in /src/ingest-pipeline
#884
dependabot[bot]
opened
5 months ago
0
Bugfix
#883
gesinaphillips
closed
5 months ago
0
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