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hubmapconsortium
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ingest-pipeline
Data ingest pipeline(s) for QA/metadata etl/post-processing
MIT License
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Bugfix: removing check of entity-api fields
#882
gesinaphillips
closed
6 months ago
0
General: Bump IVTests
#881
jpuerto-psc
closed
6 months ago
0
Updated CellDIVE params
#880
sunset666
closed
6 months ago
0
Bump sprm submodule to v1.4.1
#879
mruffalo
closed
6 months ago
0
S&C: Fix the non_global_files issues
#878
jpuerto-psc
closed
6 months ago
0
StatusChanger update to allow appending to existing metadata in Entity API
#877
gesinaphillips
closed
6 months ago
0
Bump multiome-rna-atac-pipeline submodule version to v1.1.4
#876
SFD5311
closed
6 months ago
0
Bump requests from 2.27.1 to 2.32.0 in /src/ingest-pipeline
#875
dependabot[bot]
opened
6 months ago
0
General: Fixes to address Sunset's comments
#874
jpuerto-psc
closed
6 months ago
0
Updating MAX_IN_LINE_FILES limit
#873
sunset666
closed
6 months ago
0
Multiome Updates
#872
jpuerto-psc
closed
6 months ago
0
Bumping salmon-rnaseq to v2.2.3
#871
SFD5311
closed
7 months ago
0
Jpuerto/dc helper dag
#870
jpuerto-psc
closed
7 months ago
0
Bump salmon-rnaseq to v2.2.2
#869
SFD5311
closed
7 months ago
0
Bump salmon-rnaseq pipeline to v2.2.1
#868
SFD5311
closed
7 months ago
0
Bump tqdm from 4.36.1 to 4.66.3 in /src/ingest-pipeline
#867
dependabot[bot]
opened
7 months ago
0
General: Bump IVT to update MUSIC
#866
jpuerto-psc
closed
7 months ago
0
Adding processes argument to cwltool
#865
sunset666
closed
7 months ago
0
General: Bump IVT to include MUSIC
#864
jpuerto-psc
closed
7 months ago
0
Bump sprm submodule to v1.4.0
#863
mruffalo
closed
7 months ago
0
Mruffalo/multiome dag snareseq fix
#862
SFD5311
closed
6 months ago
0
Error classification
#861
gesinaphillips
closed
1 month ago
0
Sfd5311/multiome dag
#860
SFD5311
closed
7 months ago
0
New DAG for bulk processing
#859
sunset666
closed
8 months ago
0
DAGs: Change SnapATAC to ArchR for the pipeline shorthand.
#858
jpuerto-psc
closed
8 months ago
1
General: Make sure we use the same parameter name
#857
jpuerto-psc
closed
8 months ago
0
Removing duplicated parameter
#856
sunset666
closed
8 months ago
0
New endpoint for bulk submission
#855
sunset666
closed
8 months ago
0
SenNet syncing and parametrization updates
#854
sunset666
closed
8 months ago
0
Bump celldive-pipeline submodule to v1.3.8
#853
mruffalo
closed
8 months ago
0
Adding rebuilding metadata resource mapping
#852
sunset666
closed
8 months ago
0
Nihdev 512 ingest pipeline add support for populating component datasets
#851
jpuerto-psc
closed
9 months ago
0
Building metadata for multi-assay components
#850
sunset666
closed
9 months ago
0
Bumping salmon-rnaseq to v2.1.19
#849
SFD5311
closed
9 months ago
0
Adding IVT to dag_provenance_list Primary dataset
#848
sunset666
closed
9 months ago
0
Update to support change in IVT
#847
gesinaphillips
closed
9 months ago
0
Adding IVT git hash to dag_provenance_list
#846
sunset666
closed
9 months ago
0
Adding log and new header
#845
sunset666
closed
9 months ago
0
Bugfix old reference to data_types
#844
sunset666
closed
9 months ago
0
Adding app_context support for IVT
#843
sunset666
closed
9 months ago
0
Sfd5311/visium multiome dags
#842
SFD5311
closed
9 months ago
0
Jpuerto/example8 dag
#841
jpuerto-psc
opened
10 months ago
2
Updating send_status
#840
sunset666
closed
10 months ago
0
Jpuerto/nihdev 455 split and create support shared uploads
#839
jpuerto-psc
closed
8 months ago
0
Bugfix old data_type validation
#838
sunset666
closed
10 months ago
0
Deprecate the use of `hubmap_commons.type_client`
#837
yuanzhou
closed
4 months ago
3
Bugfix
#836
sunset666
closed
10 months ago
0
updating ingest-validation-tools and ingest-validation-tests
#835
gesinaphillips
closed
10 months ago
0
Bugfixing
#834
sunset666
closed
10 months ago
0
Revert "Update portal containers submodule"
#833
sunset666
closed
10 months ago
0
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