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As I explain to other researchers the merits of DADA2, I am always at a loss as to what to call the final sequences from the DADA2 results. I usually just say "OTU", because it is easy to understand, …
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**Submitting author:** @akrinos (Arianna Krinos)
**Repository:** https://github.com/AlexanderLabWHOI/EUKulele
**Version:** v1.0.2b
**Editor:** @will-rowe
**Reviewer:** @johanneswerner, @jcmcnch
**Arch…
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I'm a bioinformatician with a research group studying - broadly - microbial ecology. We're doing lots of metabarcoding experiments, so in 2018 I created two custom taxonomy assignment training sets to…
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I tried to parse .bib files exported from scopus today but ended up with a total mess of column names (see below).
``` r
bib_string No coercion to numeric applied.
#> # A tibble: …
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**Submitting author:** @achennu (Arjun Chennu)
**Repository:** https://github.com/achennu/microbenthos
**Version:** v0.9
**Editor:** @lheagy
**Reviewer:** @leouieda
**Archive:** 10.5281/zenodo.12…
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Carried from https://github.com/obi-ontology/obi/issues/990
Prev ticket #22
Add microbiome as synonym of microbial community
I would argue for exact synonym: but there is an argument that mic…
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hello no work fix
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Hi,
I met some issue when I tried to install your package. I tried to use source, but I met another issues.
Thanks for your help!
R version 3.6.0 (2019-04-26)
install_github("lmc297/bactaxR")…
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When two lines have the same "title" AND "year" AND "authors" keep only one (the first? the most complete?)
Below the three key in ISI and SCOPUS:
- title --> ISI = TI / Scopus = Title
- year -->…
tommv updated
3 years ago
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Hello,
I am using sourmash to de-duplicate metagenome-assembled genomes. I tried the tutorial at http://sourmash.readthedocs.io/en/latest/tutorials.html#compare-many-signatures-and-build-a-tree and…