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Hello! I'm using v0.9.3 I got an error in the `rule extract_leftover_reads_wc` step.
yml:
```
samples:
- ckd_AA_RX_25_31201053301001_LP_550_C1_L2_R128
outdir: outputs.ckd/
sourmash_databas…
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Hi ampvis2 team,
I enjoy using the package and having mainly used phyloseq in R, I find ampvis2 very intuitive to use for visualizing microbiome data.
However, I have found a way to plot a PCo…
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Bald sea urchin disease shifts the surface microbiome on purple sea urchins in an aquarium – Chloe G Shaw – Pathogens and Disease
https://academic.oup.com/femspd/article/doi/10.1093/femspd/ftad025/7…
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Hello,
I was hoping you might have some advice about understanding an issue I am running into with some microbiome samples (fungal community in soybean at ITS region).
The issue has to do with i…
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Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment - Michael B. Burns et al. - Genome Med
https://pubmed.ncbi.nlm.nih.gov/26170900/
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The MOFA Bioc package (see https://microbiome.github.io/OMA/multi-assay-analyses.html) requires a bit multi-faceted process for MAE data -> assess whether we could support PR or wrapper to enable MAE …
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Hi Joey711,
Hope my message is in the right place, it's not directly a phyloseq problem but I think this may be of interest for other phyloseq users, and that at least, someone reading these posts …
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My name is Alejandro Ramos, and I am a PhD candidate in Computer Science at ITESM MTY in Mexico. I am interested in collaborating with you on optimizing the Python script to enhance its computationa…
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In OHMI, we currently assert 'host-microbiome interaction' as a subclass of GO 'interaction with host'. However, this assertion is not a good fit because the term 'host-microbiome interaction' focuses…
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Gut dysbiosis induces the development of depression-like behavior through abnormal synapse pruning in microglia-mediated by complement C3 – Wenzhi Hao – Microbiome