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KasperSkytte
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ampvis2
Tools for visualising microbial community amplicon data
https://kasperskytte.github.io/ampvis2/
GNU General Public License v3.0
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error while using the amp_core function of ampis 2
#173
SafiyaYakubu
closed
2 days ago
4
How to plot a dendrogram in ampvis2?
#172
LingTJ
closed
2 days ago
2
Including the visualisation of the Shannon alpha diversity levels in the amp_ordinate() function
#171
marcellinaR
opened
2 weeks ago
1
Add plot alpha diversity
#170
paulzierep
opened
3 months ago
5
metadata factor levels are dropped, boxplot+heatmap
#169
KasperSkytte
opened
4 months ago
0
Heatmap normalise_by only works by sample names
#168
bernt-matthias
opened
5 months ago
4
How to `group_by` in `use amp_frequency`
#167
bernt-matthias
opened
5 months ago
2
Specify ASV/OTU column by name or index?
#166
bernt-matthias
closed
1 month ago
3
amp_boxplot errors when group_by has length > 1
#165
KasperSkytte
closed
5 months ago
0
Problems plotting functions in amp_heatmap when aggregating on species-level
#164
SofieZacho
opened
6 months ago
0
How to reorder the Y axis from the default ampvis2 heatmap
#163
isuvodeep
closed
9 months ago
1
boxplot doesn't order taxa correctly
#162
KasperSkytte
closed
9 months ago
2
amp_boxplot order genera by corresponding phyla
#161
uschuette
closed
9 months ago
1
Generating loading/biplot
#160
susheelbhanu
closed
10 months ago
1
Similar values for Shannon diversity for rarefied and unrarefied reads
#159
afmbafmb
closed
10 months ago
2
amp_filter_samples returns NA's in tax if taxonomy has fewer entries than abund
#158
KasperSkytte
closed
11 months ago
2
R fatal error when drawing heatmaps with more than 2 variables
#157
courtherms
closed
11 months ago
7
amp_ordinate NMDS # of axes
#156
uschuette
closed
11 months ago
2
the sample_color_order variable of the amp_ordinate function
#155
jsevereyn
closed
11 months ago
1
amp_ordinate: sample_trajectory by date is returning error
#154
KasperSkytte
closed
1 year ago
0
About to know_Can I change the color in the ordination plots
#153
isuvodeep
closed
1 year ago
1
amp_boxplot is broken
#152
KasperSkytte
closed
1 year ago
0
object error going into amp_ordinate
#151
emihoe
closed
1 year ago
4
amp_heatmap with more than one level to tax_add errors
#150
KasperSkytte
closed
1 year ago
0
filter_otus removes too few OTU's
#149
KasperSkytte
closed
1 year ago
1
in amp_heatmap; plot_function = TRUE the functional information is not imported for the genera with names containing space (e.g. Blvii28 wastewater-sludge group or Clostridium sensu stricto 1)
#148
martanierychlo
closed
9 months ago
0
ampvis2.object with dada2 outputs
#147
marasodi
closed
1 year ago
15
heatmap error in Galaxy tool
#146
bernt-matthias
closed
1 year ago
2
stats on ordination
#145
emihoe
closed
2 years ago
9
Merge ampvis2 additions
#144
KasperSkytte
closed
2 years ago
0
error when using facet_by with amp_heatmap
#143
ctekellogg
closed
2 years ago
2
Fixed Error
#142
akcp-phd
closed
2 years ago
0
fix error
#141
SebastianDall
closed
2 years ago
0
Edit taxa labels in amp_heatmap plot
#140
msmcfarlin
closed
2 years ago
4
add metadata variable types to docs
#139
bernt-matthias
closed
2 weeks ago
1
ordinate: NMDS with unifrac
#138
bernt-matthias
closed
2 years ago
2
load doParallel only if needed
#137
bernt-matthias
closed
2 years ago
1
should mergereplicates modify the metadata?
#136
bernt-matthias
closed
2 years ago
1
ampvis2 warns about new version available
#135
bernt-matthias
closed
2 years ago
1
mergereplicates: do not require SampleID column
#134
bernt-matthias
closed
2 years ago
0
replace ggnet by GGally
#133
bernt-matthias
closed
2 years ago
2
venn returns NULL for detailed_output
#132
bernt-matthias
closed
2 years ago
0
amp_timeseries does not support the format argument
#131
bernt-matthias
closed
2 years ago
3
heatmap: errror when using normalise_by
#130
bernt-matthias
closed
2 years ago
1
How to use the metadata from a biom file?
#129
bernt-matthias
closed
2 years ago
5
Development
#128
KasperSkytte
closed
2 years ago
0
Unmatch raw reads that exporting from DADA2 to importing to Ampvis2
#127
phxu452
closed
2 years ago
8
Update 'master' branch name to 'main'
#126
sabahzero
closed
2 years ago
1
Getting started to include the installation instructions.
#125
Kirk3gaard
closed
2 years ago
2
issues when generating plots using function amp_diffabund
#124
Xinming9606
closed
2 years ago
2
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