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KasperSkytte
/
ampvis2
Tools for visualising microbial community amplicon data
https://kasperskytte.github.io/ampvis2/
GNU General Public License v3.0
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aggregate_abund not working for my data
#123
ShaunAl
closed
2 years ago
1
amp_heatmap tax_show vector gives warning
#122
KasperSkytte
closed
2 years ago
0
QIIMEtoR?
#121
KasperSkytte
closed
2 years ago
1
midas field guide function data not found at second run
#120
KasperSkytte
closed
2 years ago
0
Heatmap function creates multiple overlapped heatmap tiles
#119
msdueholm
closed
2 years ago
1
How to export a dendrogram from PCoA
#118
LingTJ
closed
2 years ago
2
amp_rarecurve() bug with 0 reads observations
#117
brendbech
closed
2 years ago
1
Revamp of the amp_heatmap() function to display samplewise top tax levels
#116
brendbech
closed
2 years ago
4
Core microbiome list export
#115
am750
closed
2 years ago
3
Cannot load the tree correctly
#114
Lei0509
closed
2 years ago
1
Also problems with Mothur BIOM file
#113
noah472
closed
3 years ago
2
facet_by triggers group_by to use the same variable
#112
Kirk3gaard
closed
3 years ago
2
Metadata column named "Group" cause problems with amp_heatmap
#111
Kirk3gaard
closed
3 years ago
1
amp-Ordinate function using Aitchison distance
#110
Hesham999666
closed
3 years ago
2
Reduce number of dependencies
#109
KasperSkytte
closed
3 years ago
0
Cannot install package succesfully
#108
xkcococo
closed
3 years ago
1
Issue with amp_ordinate, Error in caption
#107
jarrodscott
closed
3 years ago
2
amp_alphadiv broken with current version of R packages
#106
nr0cinu
closed
3 years ago
7
Debug amp_rename with this data
#105
KasperSkytte
closed
3 years ago
0
PruneSingletons = TRUE removes all OTU
#104
afmbafmb
closed
3 years ago
5
amp_ordinate
#103
PatoUru
closed
3 years ago
1
amp_heatmap drops the first "s" in a species name
#102
hmaru
closed
3 years ago
2
Ampvis_rarecurve overlap label
#101
dikiprawisuda
closed
3 years ago
4
Problem with mothur biom file
#100
Cupplesam
closed
3 years ago
4
amp_boxplots by OTUs?
#99
jarrodscott
closed
3 years ago
3
amp_ordinate nMDS + weighted unifrac
#98
AviHuene
closed
3 years ago
1
amp_rarefy is not exported
#97
nallward
closed
3 years ago
1
ampvis2 shiny
#96
miguensblanco
closed
3 years ago
10
amp_heatmap; add row for the sum of all "Other"
#95
macramm
closed
4 years ago
4
amp_load
#94
reyt1
closed
4 years ago
9
amp_heatmap truncates taxa label if it contains white space
#93
lixiaopi1985
closed
4 years ago
3
Load library ampvis2 error
#92
Jessie-HOU
closed
4 years ago
6
amp_venn issue
#91
lesserof2weevils
closed
4 years ago
7
unable to load ampvis2 package
#90
pradeepvirol
closed
4 years ago
6
amp_boxplots - method to determine significance for taxa between designated groups?
#89
reige012
closed
4 years ago
5
facet_by error in 'amp_heatmap' function
#88
Jessie-HOU
closed
4 years ago
4
sample_color_order argument in amp_ordinate
#87
slambrechts
closed
4 years ago
1
Broken link in README
#86
mikemc
closed
4 years ago
1
Error in unit(rep(just$hjust, n), "npc")
#85
susheelbhanu
closed
4 years ago
4
amp_heatmap (tax_class) feature request
#84
slambrechts
closed
4 years ago
1
normalizing across samples using a variance stabilizing transformation (vst)
#83
slambrechts
closed
4 years ago
1
Normalization doesn't work well with zeros
#82
jamesfifer
closed
4 years ago
1
Order of labels
#81
susheelbhanu
closed
4 years ago
2
Issue with species_plotly function in amp_ordinate
#80
moverg
closed
4 years ago
2
Is it possible to add species plot for NMDS ordination using amp_ordinate?
#79
vbalanus
closed
4 years ago
5
Problem with amp_ordinate NMDS
#78
vbalanus
closed
4 years ago
2
Installation problem (solved) on R 3.6.1 (Windows) caused by ggplot2
#77
jgrzadziel
closed
4 years ago
4
Alpha diversity without singletons
#76
GenomicaMicrob
closed
4 years ago
3
Venn diagram of core OTUs
#75
apoosakkannu
closed
4 years ago
1
Does ampvis2 exports an object in biom format?
#74
FilipeMatteoli
closed
4 years ago
1
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