issues
search
KasperSkytte
/
ampvis2
Tools for visualising microbial community amplicon data
https://kasperskytte.github.io/ampvis2/
GNU General Public License v3.0
67
stars
24
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
issues when generating plots using function amp_diffabund
#124
Xinming9606
closed
3 years ago
2
aggregate_abund not working for my data
#123
ShaunAl
closed
3 years ago
1
amp_heatmap tax_show vector gives warning
#122
KasperSkytte
closed
3 years ago
0
QIIMEtoR?
#121
KasperSkytte
closed
3 years ago
1
midas field guide function data not found at second run
#120
KasperSkytte
closed
3 years ago
0
Heatmap function creates multiple overlapped heatmap tiles
#119
msdueholm
closed
2 years ago
1
How to export a dendrogram from PCoA
#118
LingTJ
closed
3 years ago
2
amp_rarecurve() bug with 0 reads observations
#117
brendbech
closed
3 years ago
1
Revamp of the amp_heatmap() function to display samplewise top tax levels
#116
brendbech
closed
3 years ago
4
Core microbiome list export
#115
am750
closed
3 years ago
3
Cannot load the tree correctly
#114
Lei0509
closed
3 years ago
1
Also problems with Mothur BIOM file
#113
noah472
closed
3 years ago
2
facet_by triggers group_by to use the same variable
#112
Kirk3gaard
closed
3 years ago
2
Metadata column named "Group" cause problems with amp_heatmap
#111
Kirk3gaard
closed
3 years ago
1
amp-Ordinate function using Aitchison distance
#110
Hesham999666
closed
3 years ago
2
Reduce number of dependencies
#109
KasperSkytte
closed
3 years ago
0
Cannot install package succesfully
#108
xkcococo
closed
3 years ago
1
Issue with amp_ordinate, Error in caption
#107
jarrodscott
closed
3 years ago
2
amp_alphadiv broken with current version of R packages
#106
nr0cinu
closed
3 years ago
7
Debug amp_rename with this data
#105
KasperSkytte
closed
3 years ago
0
PruneSingletons = TRUE removes all OTU
#104
afmbafmb
closed
4 years ago
5
amp_ordinate
#103
PatoUru
closed
4 years ago
1
amp_heatmap drops the first "s" in a species name
#102
hmaru
closed
4 years ago
2
Ampvis_rarecurve overlap label
#101
dikiprawisuda
closed
4 years ago
4
Problem with mothur biom file
#100
Cupplesam
closed
3 years ago
4
amp_boxplots by OTUs?
#99
jarrodscott
closed
4 years ago
3
amp_ordinate nMDS + weighted unifrac
#98
AviHuene
closed
3 years ago
1
amp_rarefy is not exported
#97
nallward
closed
4 years ago
1
ampvis2 shiny
#96
miguensblanco
closed
4 years ago
10
amp_heatmap; add row for the sum of all "Other"
#95
macramm
closed
4 years ago
4
amp_load
#94
reyt1
closed
4 years ago
9
amp_heatmap truncates taxa label if it contains white space
#93
lixiaopi1985
closed
4 years ago
3
Load library ampvis2 error
#92
Jessie-HOU
closed
4 years ago
6
amp_venn issue
#91
lesserof2weevils
closed
4 years ago
7
unable to load ampvis2 package
#90
pradeepvirol
closed
4 years ago
6
amp_boxplots - method to determine significance for taxa between designated groups?
#89
reige012
closed
4 years ago
5
facet_by error in 'amp_heatmap' function
#88
Jessie-HOU
closed
4 years ago
4
sample_color_order argument in amp_ordinate
#87
slambrechts
closed
4 years ago
1
Broken link in README
#86
mikemc
closed
4 years ago
1
Error in unit(rep(just$hjust, n), "npc")
#85
susheelbhanu
closed
4 years ago
4
amp_heatmap (tax_class) feature request
#84
slambrechts
closed
4 years ago
1
normalizing across samples using a variance stabilizing transformation (vst)
#83
slambrechts
closed
4 years ago
1
Normalization doesn't work well with zeros
#82
jamesfifer
closed
4 years ago
1
Order of labels
#81
susheelbhanu
closed
5 years ago
2
Issue with species_plotly function in amp_ordinate
#80
moverg
closed
5 years ago
2
Is it possible to add species plot for NMDS ordination using amp_ordinate?
#79
vbalanus
closed
5 years ago
5
Problem with amp_ordinate NMDS
#78
vbalanus
closed
5 years ago
2
Installation problem (solved) on R 3.6.1 (Windows) caused by ggplot2
#77
jgrzadziel
closed
5 years ago
4
Alpha diversity without singletons
#76
GenomicaMicrob
closed
5 years ago
3
Venn diagram of core OTUs
#75
apoosakkannu
closed
5 years ago
1
Previous
Next