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If I create a VAE with "nb" rather than "zinb", I get the error
```
E RuntimeError: expand(torch.cuda.FloatTensor{[128]}, size=[]): the number of sizes provided (0) must be greater or equal to…
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Hi,
I tried a few notebooks and I can't rich the end of anyone I tried.
Let's focus on the allen_smFISH.ipynb here :
At the step 5
```
from starfish.pipeline.filter import Filter
s_clip = Fi…
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@imyiningliu -- I think Maxime, Eddie, and Chenling are all working with datasets now that aren't yet "wrapped" by scVI. It'd be great if you could talk with all three of them to find out what datas…
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Currently it generates SpotAttributes and EncoderTable. Update this method.
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That seems backwards: the wrapper usually knows about class it wraps, not the other way around. Is there a way to just combine DataLoader and DataLoaderWrapper into one class? I don't think we ever wa…
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Hi Mo,
I followed your filtering procedure as proposed in your paper: filtering genes which have mean expression less than 0.1 and cells with library size less than 500 or greater than 20000 for To…
WT215 updated
6 years ago
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Hi, I am new both at Holoviews and Datashader. But I tried to get the same plot that I get using datashader using Holoviews but it is being impossible because the datashade function does not have this…
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Hi again!
I am trying to load a 100GB nd2 (ND2file) image I am getting the following error from the parser. I have been using nd2reader for other files and it has been working very well.
thanks
Simon…
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Hi
I tried to run nd2reader to convert a multiposition (xyz) file with two channels and I get a no recorded time error (I guess it is missing in the DB).
I pasted the traceback below.
Thanks a lot! t…