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spacetx
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starfish
starfish: unified pipelines for image-based transcriptomics
https://spacetx-starfish.readthedocs.io/en/latest/
MIT License
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Bump tornado from 6.4.1 to 6.4.2 in /requirements
#2038
dependabot[bot]
closed
4 days ago
0
sync
#2037
chaichontat
closed
6 days ago
2
Bump lxml-html-clean from 0.3.1 to 0.4.0 in /requirements
#2036
dependabot[bot]
closed
5 days ago
0
Replace scipy.ndimage.filters with scipy.ndimage for scipy v2 support
#2035
shachafl
closed
5 days ago
0
Update Actions version in starfish-prod-ci.yml
#2034
shachafl
closed
5 days ago
0
Create dependabot.yml to update Actions version
#2033
shachafl
closed
5 days ago
0
scipy.ndimage.filters namespace is deprecated and will be removed in SciPy 2.0.0.
#2032
shachafl
closed
5 days ago
0
xarray versions 2023.9+ introduce new errors in testing
#2031
shachafl
opened
1 week ago
0
Updating CHANGELOG.md for release 0.3.1
#2030
shachafl
closed
1 week ago
1
Fixing Pypi long description not loading
#2029
shachafl
closed
2 weeks ago
1
Project description from README.rst file doesn't load on PyPI
#2028
shachafl
opened
2 weeks ago
2
Adding support to Python 3.12
#2027
shachafl
closed
2 weeks ago
1
Update scikit-image version (to >0.21) in REQUIREMENTS.txt file
#2026
shachafl
opened
1 month ago
0
Numpy 1.26 update to support Python 3.12
#2025
shachafl
closed
1 month ago
1
Update numpy in REQUIREMENTS.txt for compatibility with Python 3.12
#2024
shachafl
closed
1 month ago
0
fixing blob radius calculation in 2d
#2023
shachafl
closed
1 month ago
1
2d radius calculation in blob detection (blob.py) is incorrect
#2022
shachafl
closed
1 month ago
0
Release 0.3.0
#2021
shachafl
closed
1 month ago
3
Upgrading jsonschema to 4.18+ to resolve security issues with older dependencies breaks starfish
#2020
shachafl
opened
2 months ago
3
Sphinx html latest build issues with missing top left icon and dropdown menu not working
#2019
shachafl
opened
2 months ago
0
Dropping support for Python 3.8 and setting Python 3.9 as minimum
#2018
shachafl
closed
2 months ago
0
Bump jupyterlab from 4.1.6 to 4.2.5 in /requirements
#2017
dependabot[bot]
opened
2 months ago
0
Bump notebook from 7.1.3 to 7.2.2 in /requirements
#2016
dependabot[bot]
opened
2 months ago
0
Bump setuptools from 56.0.0 to 70.0.0 in /requirements
#2015
dependabot[bot]
closed
2 months ago
1
Update readthedocs.yml
#2014
berl
closed
2 months ago
1
Error in loading ISS data in quick start tutorial
#2013
rocketeer1998
closed
2 months ago
3
question about quick start_display
#2012
YichengShao11
closed
8 months ago
2
versioneeer.py breaks on installation
#2011
johnfmarkham
closed
2 weeks ago
4
How can I do 3D spot detection or 3D decoding?
#2010
hziyin
closed
1 month ago
2
Scripts and dependencies updates for Python 3.8 - 3.10
#2009
shachafl
closed
3 months ago
8
Add min_distance parameter to peak_local_max call
#2008
iimog
closed
12 months ago
5
barcodeBuildFunc modifies external variables
#2007
guoyang-github
opened
1 year ago
1
MinDistanceLabel does not enforce minimum distance, leading to over-segmentation
#2006
iimog
closed
10 months ago
1
Possible parameter inversion in LearnTransform.Translation class
#2005
guoyang-github
opened
1 year ago
2
Unable to run dev install on Mac M2
#2004
ctcisar
closed
2 months ago
2
ValueError when running BlobDetector
#2003
iimog
opened
1 year ago
2
Update installation section in the README.rst and readthedocs.io
#2002
shachafl
closed
1 month ago
1
Bump ipython from 8.4.0 to 8.10.0 in /starfish
#2001
dependabot[bot]
closed
3 months ago
2
Bump ipython from 7.27.0 to 8.10.0 in /requirements
#2000
dependabot[bot]
closed
3 months ago
2
Bump cryptography from 3.4.8 to 39.0.1 in /requirements
#1999
dependabot[bot]
closed
3 months ago
2
Bump setuptools from 58.1.0 to 65.5.1 in /starfish
#1998
dependabot[bot]
closed
3 months ago
1
Bump setuptools from 58.1.0 to 65.5.1 in /requirements
#1997
dependabot[bot]
closed
3 months ago
1
Bump certifi from 2022.6.15 to 2022.12.7 in /starfish
#1996
dependabot[bot]
closed
3 months ago
2
Bump certifi from 2022.6.15 to 2022.12.7 in /requirements
#1995
dependabot[bot]
closed
3 months ago
2
Bump pillow from 9.1.1 to 9.3.0 in /starfish
#1994
dependabot[bot]
closed
3 months ago
2
Bump pillow from 8.3.2 to 9.3.0 in /requirements
#1993
dependabot[bot]
closed
3 months ago
2
Bump joblib from 1.1.0 to 1.2.0 in /starfish
#1992
dependabot[bot]
closed
3 months ago
2
Bump joblib from 1.0.1 to 1.2.0 in /requirements
#1991
dependabot[bot]
closed
3 months ago
2
Bump nbconvert from 6.5.0 to 6.5.1 in /starfish
#1990
dependabot[bot]
closed
3 months ago
2
Bump nbconvert from 6.5.0 to 6.5.1 in /requirements
#1989
dependabot[bot]
closed
3 months ago
2
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