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spacetx
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starfish
starfish: unified pipelines for image-based transcriptomics
https://spacetx-starfish.readthedocs.io/en/latest/
MIT License
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Error in loading ISS data in quick start tutorial
#2013
rocketeer1998
opened
3 months ago
2
question about quick start_display
#2012
YichengShao11
closed
3 months ago
2
versioneeer.py breaks on installation
#2011
johnfmarkham
opened
4 months ago
4
How can I do 3D spot detection or 3D decoding?
#2010
hziyin
opened
4 months ago
1
Scripts and dependencies updates for Python 3.8 - 3.10
#2009
shachafl
opened
4 months ago
8
Add min_distance parameter to peak_local_max call
#2008
iimog
closed
7 months ago
5
barcodeBuildFunc modifies external variables
#2007
guoyang-github
opened
7 months ago
1
MinDistanceLabel does not enforce minimum distance, leading to over-segmentation
#2006
iimog
closed
5 months ago
1
Possible parameter inversion in LearnTransform.Translation class
#2005
guoyang-github
opened
7 months ago
2
Unable to run dev install on Mac M2
#2004
ctcisar
opened
1 year ago
1
ValueError when running BlobDetector
#2003
iimog
opened
1 year ago
2
Update installation section in the README.rst and readthedocs.io
#2002
shachafl
opened
1 year ago
0
Bump ipython from 8.4.0 to 8.10.0 in /starfish
#2001
dependabot[bot]
opened
1 year ago
0
Bump ipython from 7.27.0 to 8.10.0 in /requirements
#2000
dependabot[bot]
opened
1 year ago
0
Bump cryptography from 3.4.8 to 39.0.1 in /requirements
#1999
dependabot[bot]
opened
1 year ago
0
Bump setuptools from 58.1.0 to 65.5.1 in /starfish
#1998
dependabot[bot]
opened
1 year ago
0
Bump setuptools from 58.1.0 to 65.5.1 in /requirements
#1997
dependabot[bot]
opened
1 year ago
0
Bump certifi from 2022.6.15 to 2022.12.7 in /starfish
#1996
dependabot[bot]
opened
1 year ago
0
Bump certifi from 2022.6.15 to 2022.12.7 in /requirements
#1995
dependabot[bot]
opened
1 year ago
0
Bump pillow from 9.1.1 to 9.3.0 in /starfish
#1994
dependabot[bot]
opened
1 year ago
0
Bump pillow from 8.3.2 to 9.3.0 in /requirements
#1993
dependabot[bot]
opened
1 year ago
0
Bump joblib from 1.1.0 to 1.2.0 in /starfish
#1992
dependabot[bot]
opened
1 year ago
0
Bump joblib from 1.0.1 to 1.2.0 in /requirements
#1991
dependabot[bot]
opened
1 year ago
0
Bump nbconvert from 6.5.0 to 6.5.1 in /starfish
#1990
dependabot[bot]
opened
1 year ago
0
Bump nbconvert from 6.5.0 to 6.5.1 in /requirements
#1989
dependabot[bot]
opened
1 year ago
0
Couldn't install without specifying an older version of scikit-image (0.17.2)
#1988
ryandikdan
closed
1 year ago
5
Bump mistune from 0.8.4 to 2.0.3 in /requirements
#1987
dependabot[bot]
opened
1 year ago
0
Bump mistune from 0.8.4 to 2.0.3 in /starfish
#1986
dependabot[bot]
opened
1 year ago
0
Various Small Fixes/Improvements
#1985
nickeener
closed
1 year ago
2
Clone of https://github.com/spacetx/starfish/pull/1978
#1984
ttung
closed
1 year ago
1
Bump numpy from 1.21.2 to 1.22.0 in /requirements
#1983
dependabot[bot]
closed
1 year ago
1
Bump numpy from 1.21.2 to 1.22.0 in /starfish
#1982
dependabot[bot]
closed
1 year ago
1
Bump numpy from 1.21.2 to 1.22.0
#1981
dependabot[bot]
closed
1 year ago
1
Bump notebook from 6.4.3 to 6.4.12 in /requirements
#1980
dependabot[bot]
closed
1 year ago
1
Bump notebook from 6.4.3 to 6.4.12 in /starfish
#1979
dependabot[bot]
closed
1 year ago
1
Updated seqFISH Decoding Method: CheckAll Decoder
#1978
nickeener
closed
1 year ago
15
Bump notebook from 6.4.3 to 6.4.10 in /requirements
#1977
dependabot[bot]
closed
2 years ago
1
Bump notebook from 6.4.3 to 6.4.10 in /starfish
#1976
dependabot[bot]
closed
2 years ago
1
change Codebook data default dtype to float
#1975
berl
opened
2 years ago
0
Bump pillow from 8.3.2 to 9.0.1 in /requirements
#1974
dependabot[bot]
closed
1 year ago
1
Bump pillow from 8.3.2 to 9.0.1 in /starfish
#1973
dependabot[bot]
closed
1 year ago
1
Bump ipython from 7.27.0 to 7.31.1 in /requirements
#1972
dependabot[bot]
closed
1 year ago
1
Bump ipython from 7.27.0 to 7.31.1 in /starfish
#1971
dependabot[bot]
closed
1 year ago
1
Bump pillow from 8.3.2 to 9.0.0 in /requirements
#1970
dependabot[bot]
closed
2 years ago
1
Bump pillow from 8.3.2 to 9.0.0 in /starfish
#1969
dependabot[bot]
closed
2 years ago
1
Bump dask from 2021.9.0 to 2021.10.0 in /requirements
#1968
dependabot[bot]
closed
2 years ago
0
Revert "Revert "Fix coords assignment in CombineAdjustFeatures.run""
#1967
berl
closed
2 years ago
0
Revert "Fix coords assignment in CombineAdjustFeatures.run"
#1966
berl
closed
2 years ago
0
Fix coords assignment in CombineAdjustFeatures.run
#1965
sgratiy
closed
2 years ago
5
New seqFISH Decoding Method
#1964
ttung
closed
2 years ago
2
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