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spacetx
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starfish
starfish: unified pipelines for image-based transcriptomics
https://spacetx-starfish.readthedocs.io/en/latest/
MIT License
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Update Starfish CI and dependencies
#1963
njmei
closed
2 years ago
6
Update Starfish CI and dependencies
#1962
njmei
closed
2 years ago
1
SpotFindingResults Serialization to Disk (and loading)
#1961
ctcisar
opened
2 years ago
8
New seqFISH Decoding Method
#1960
nickeener
closed
1 year ago
29
Bump pillow from 8.2.0 to 8.3.2 in /requirements
#1959
dependabot[bot]
closed
2 years ago
1
Bump pillow from 8.2.0 to 8.3.2 in /starfish
#1958
dependabot[bot]
closed
2 years ago
1
[WIP] Replace Travis CI with Github Actions
#1957
njmei
closed
2 years ago
1
Update TransformsList class with `to_dict()` and `from_dict()` methods
#1956
njmei
closed
2 years ago
0
Bump notebook from 6.3.0 to 6.4.1 in /requirements
#1955
dependabot[bot]
closed
2 years ago
1
Bump notebook from 6.3.0 to 6.4.1 in /starfish
#1954
dependabot[bot]
closed
2 years ago
1
Update for compatibility with Python3.9
#1953
ora-lv
closed
3 years ago
0
AttributeError: 'DataArray' object has no attribute 'flags' in quick start run
#1952
sebherbert
closed
2 years ago
9
Update registration module to be compatible with current scikit-image 0.18 and Python 3.9
#1951
mattcai
closed
1 year ago
3
starfish is incompatible with Python 3.9
#1950
ora-lv
closed
2 years ago
1
Bump urllib3 from 1.26.4 to 1.26.5 in /requirements
#1949
dependabot[bot]
closed
2 years ago
2
Bump urllib3 from 1.26.4 to 1.26.5 in /starfish
#1948
dependabot[bot]
closed
2 years ago
2
adds explicit statement of need
#1947
neuromusic
closed
3 years ago
0
scikit-image version fix
#1946
haoxusci
closed
2 years ago
5
Bump all the requirements
#1945
ttung
closed
3 years ago
1
Bump urllib3 from 1.26.3 to 1.26.4 in /requirements
#1944
dependabot[bot]
closed
3 years ago
1
Bump urllib3 from 1.26.3 to 1.26.4 in /starfish
#1943
dependabot[bot]
closed
3 years ago
0
Small fixes to manuscript
#1942
csoneson
closed
3 years ago
1
Support skimage version higher than 0.17.2
#1941
pjb7687
closed
3 years ago
4
Bump pillow from 8.1.0 to 8.1.1 in /requirements
#1940
dependabot[bot]
closed
3 years ago
0
Bump pillow from 8.1.0 to 8.1.1 in /starfish
#1939
dependabot[bot]
closed
3 years ago
0
final revisions for JOSS manuscript
#1938
neuromusic
closed
3 years ago
1
Link to raw data is not working
#1937
mstemmer
opened
3 years ago
2
Update dependencies.
#1936
ttung
closed
3 years ago
1
Upgrade to a consistent version of pip in all workflows
#1935
ttung
closed
3 years ago
1
Use m2r2 instead of m2r
#1934
ttung
closed
3 years ago
1
Import match_histograms from skimage.exposure
#1933
ttung
closed
3 years ago
0
error importing scikit's 'match_histograms'
#1932
juliomateoslangerak
closed
3 years ago
2
Bump the version of pip to unbreak tests
#1931
ttung
closed
3 years ago
1
Bump bleach from 3.1.4 to 3.3.0 in /requirements
#1930
dependabot[bot]
closed
3 years ago
0
Bump bleach from 3.1.4 to 3.3.0 in /starfish
#1929
dependabot[bot]
closed
3 years ago
0
Add necessary coords for IntensityTable when using Nearest Neighbors strategy
#1928
mattcai
closed
3 years ago
0
JOSS paper should mention how starfish compares to the other available tools
#1927
vals
closed
3 years ago
0
Are the masks in the left in the tutorial really two cells?
#1926
vals
closed
3 years ago
2
Tutorials making use of Napari should include screenshots of expected output.
#1925
vals
closed
3 years ago
1
'Visualizing Data' tutorial crashes at viewer.add_image step
#1924
vals
closed
3 years ago
3
Ignore requirements that are already satisfied
#1923
ttung
closed
3 years ago
0
make install-dev got error
#1922
giovp
closed
3 years ago
0
update BRL affiliation and acknowledgement
#1921
berl
closed
3 years ago
2
Move to pillow 7.1.2 instead.
#1920
ttung
closed
3 years ago
1
Use python requests to bypass certificate errors
#1919
ttung
closed
3 years ago
1
Bump pillow from 7.0.0 to 7.1.2 in /starfish
#1918
dependabot[bot]
closed
3 years ago
3
Bump pillow from 7.0.0 to 7.1.0 in /requirements
#1917
dependabot[bot]
closed
3 years ago
1
Bump notebook from 6.0.3 to 6.1.5 in /requirements
#1916
dependabot[bot]
closed
3 years ago
0
Refresh requirements.
#1915
ttung
closed
3 years ago
1
Bump notebook from 6.0.3 to 6.1.5 in /starfish
#1914
dependabot[bot]
closed
3 years ago
1
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