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spacetx
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starfish
starfish: unified pipelines for image-based transcriptomics
https://spacetx-starfish.readthedocs.io/en/latest/
MIT License
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Bump pillow from 7.0.0 to 7.1.0 in /requirements
#1917
dependabot[bot]
closed
3 years ago
1
Bump notebook from 6.0.3 to 6.1.5 in /requirements
#1916
dependabot[bot]
closed
3 years ago
0
Refresh requirements.
#1915
ttung
closed
3 years ago
1
Bump notebook from 6.0.3 to 6.1.5 in /starfish
#1914
dependabot[bot]
closed
3 years ago
1
addressing outstanding JOSS review comments
#1913
neuromusic
closed
3 years ago
2
"ValueError: in1 and in2 should have the same dimensionality" when "is_volume=True" for Filter.DeconvolvePSF
#1912
aschrader5
opened
3 years ago
0
TESTING [DO NOT MERGE]
#1911
neuromusic
closed
3 years ago
1
adds napari screenshot to quickstart
#1910
neuromusic
opened
4 years ago
3
RNAscope HiPlex Pipeline Example
#1909
mattcai
opened
4 years ago
0
Add code for downloading necessary RoiSet.zip to relevant examples
#1908
mattcai
closed
4 years ago
0
JOSS MS comments
#1907
shazanfar
closed
3 years ago
1
Address easy fixes by JOSS reviewers
#1906
mattcai
closed
4 years ago
0
JOSS paper does not mention alternative tools
#1905
vals
closed
3 years ago
0
Include output in example notebooks
#1904
vals
closed
3 years ago
2
Displaying example from data formatting tutorial
#1903
vals
closed
3 years ago
3
Update open napari window?
#1902
vals
closed
4 years ago
1
Quickstart and napari
#1901
vals
closed
4 years ago
2
More intuitive ordering for the link to documentation
#1900
vals
closed
4 years ago
1
Tutorial "Loading ImageJ ROI Sets"
#1899
giovp
closed
4 years ago
2
Tutorial "Pre-defined Watershed Segmentation Pipeline"
#1898
giovp
closed
4 years ago
0
Tutorials "How to normalize" improvements.
#1897
giovp
closed
4 years ago
2
Tutorial "Showing Image of ImageStack Plane" does not run
#1896
giovp
closed
4 years ago
3
user guide clean up
#1895
mattcai
closed
4 years ago
1
revisions to README
#1894
neuromusic
closed
4 years ago
0
Upgrade setuptools and wheel
#1893
ttung
closed
4 years ago
0
add example pipelines to sphinx gallery
#1892
mattcai
closed
4 years ago
2
Fix Windows tests
#1891
ttung
closed
4 years ago
1
[easy] remove expression
#1890
ttung
closed
4 years ago
1
Bump napari to 0.3.4
#1889
ttung
closed
4 years ago
1
Changelog for 0.2.1
#1888
ttung
closed
4 years ago
1
register_translation is deprecated
#1887
lambdamoses
closed
4 years ago
2
update docs related to data formatting and loading
#1886
mattcai
closed
4 years ago
1
readthedocs fails to build because 'DataArray' object has no attribute 'flags'
#1885
mattcai
closed
4 years ago
0
expanded api docs
#1884
mattcai
closed
4 years ago
0
reorganized help & ref section
#1883
mattcai
closed
4 years ago
1
[EASY] adds border to table for decoding decisions
#1882
neuromusic
closed
4 years ago
0
fixed docstrings of Codebook
#1881
mattcai
closed
4 years ago
1
reorganized examples gallery
#1880
mattcai
closed
4 years ago
1
JOSS abstract
#1879
neuromusic
closed
4 years ago
10
used intersphinx for external links in api docs
#1878
mattcai
closed
4 years ago
0
reorganization of docs
#1877
neuromusic
closed
4 years ago
0
added "request support" page under help and reference
#1876
mattcai
closed
4 years ago
1
improvements to design & layout of docs
#1875
neuromusic
closed
4 years ago
2
added image registration tutorial
#1874
mattcai
closed
4 years ago
1
added banner to landing page and reorganized toctree
#1873
mattcai
closed
4 years ago
1
fix how spot_ids are handled by build_traces_sequential and Label._assign()
#1872
mattcai
closed
4 years ago
1
duplicate spot_ids returned when using build_traces_sequential
#1871
mattcai
closed
4 years ago
1
blob throws error when run with no `reference_image` and `is_volume=False`
#1870
mattcai
opened
4 years ago
2
Add a Quick Start tutorial
#1869
mattcai
closed
4 years ago
1
Update starfish installation guide for JOSS submission
#1868
mattcai
closed
4 years ago
1
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