spacetx starfish issues

spacetx / starfish

starfish: unified pipelines for image-based transcriptomics

https://spacetx-starfish.readthedocs.io/en/latest/

MIT License

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issues

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added "request support" page under help and reference

#1876 mattcai closed 4 years ago
1
improvements to design & layout of docs

#1875 neuromusic closed 4 years ago
2
added image registration tutorial

#1874 mattcai closed 4 years ago
1
added banner to landing page and reorganized toctree

#1873 mattcai closed 4 years ago
1
fix how spot_ids are handled by build_traces_sequential and Label._assign()

#1872 mattcai closed 4 years ago
1
duplicate spot_ids returned when using build_traces_sequential

#1871 mattcai closed 4 years ago
1
blob throws error when run with no `reference_image` and `is_volume=False`

#1870 mattcai opened 4 years ago
2
Add a Quick Start tutorial

#1869 mattcai closed 4 years ago
1
Update starfish installation guide for JOSS submission

#1868 mattcai closed 4 years ago
1
IlastikPretrainedProbability is not compatible with cropped ImageStack

#1867 mattcai opened 4 years ago
0
ApplyTransform.Warp.run() alters the TransformsList such that it can't be used again

#1866 mattcai opened 4 years ago
1
get sphinx-gallery to render all examples

#1865 neuromusic opened 4 years ago
0
hide code blocks in examples

#1864 neuromusic opened 4 years ago
0
suppress progress bar output in doc examples

#1863 neuromusic opened 4 years ago
0
add traffic analytics to docs

#1862 neuromusic opened 4 years ago
0
make sure readthedocs ad banner doesn't block content

#1861 neuromusic opened 4 years ago
0
suppress all warnings in docs

#1860 neuromusic opened 4 years ago
0
add image banner to landing page

#1859 neuromusic closed 4 years ago
0
add an ‘advanced analysis’ section with musings about things one might do

#1858 neuromusic opened 4 years ago
0
Correcting Images How to: deconvolution

#1857 neuromusic opened 4 years ago
0
Correcting Images How to: chromatic aberration

#1856 neuromusic opened 4 years ago
0
update Output Formats

#1855 neuromusic opened 4 years ago
0
polish and highlight formatting and loading data

#1854 neuromusic closed 4 years ago
0
move and update ‘Input Formats’

#1853 neuromusic closed 4 years ago
0
add API docs for utilities

#1852 neuromusic closed 4 years ago
0
"Correcting Images" docs on How To Perform Image Registration

#1851 neuromusic closed 4 years ago
0
update "installation"

#1850 neuromusic opened 4 years ago
0
add a ‘request support’ section in ‘Help & Reference’

#1849 neuromusic closed 4 years ago
0
landing page: content refresh

#1848 neuromusic closed 4 years ago
0
JOSS abstract

#1847 neuromusic closed 4 years ago
1
removes roadmap from docs

#1846 neuromusic closed 4 years ago
1
Fix the travis test where we pin the napari version

#1845 ttung closed 4 years ago
1
Advance all requirements

#1844 ttung closed 4 years ago
1
Bump bleach from 3.1.2 to 3.1.4 in /starfish

#1843 dependabot[bot] closed 4 years ago
2
Change sphinx theme from rtd to bootswatch flatly

#1842 mattcai closed 4 years ago
0
fixed broken links in Starfish Usage

#1841 mattcai closed 4 years ago
2
the link to "SpaceTx Format" is broken

#1840 neuromusic closed 4 years ago
1
Fix localmaxpeakfinder spot_props filter

#1839 mattcai closed 4 years ago
3
Bump bleach from 3.1.1 to 3.1.2 in /requirements

#1838 dependabot[bot] closed 4 years ago
0
Bump bleach from 3.1.1 to 3.1.2 in /starfish

#1837 dependabot[bot] closed 4 years ago
1
local_max_peak_finder throws error when `is_volume=False`

#1836 mattcai opened 4 years ago
0
README: add image.sc forum badge and link

#1835 imagejan closed 4 years ago
1
link to image.sc/tag/starfish

#1834 mattcai closed 4 years ago
0
point users to image.sc forum

#1833 mattcai closed 4 years ago
2
Add assigning spots to cells docs

#1832 mattcai closed 4 years ago
3
point users to image.sc as primary support channel

#1831 neuromusic closed 4 years ago
1
Add support for kwargs to peak_local_max

#1830 ttung closed 4 years ago
1
Napari seems to want a newer version of pip

#1829 ttung closed 4 years ago
2
Re-add some doc changes that didn't make it to master

#1828 ttung closed 4 years ago
1
Revert some unintended changes.

#1827 ttung closed 4 years ago
0

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