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Flybase annotates abnormal anatomical entities with FBBT terms; downstream tools need to be able to distinguish FBBT terms from their phenotypes, and need a term for "abnormal eye". Can we find out fr…
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When trying to import the unified phenotype ontology (UPHENO), I run into some errors about `Too many cyclic paths (> 1000).` Is there something different about this ontology? If so, is there a way i…
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Currently there are different variants of ontologies available:
- https://oboacademy.github.io/obook/explanation/owl-format-variants/
Depending on the use case, a user may wish to use different…
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Greetings FAO,
We'd like to import some of your classes into ENVO, but they dangle uncomfortably off the top level.
Could [`fungal structure`](http://purl.obolibrary.org/obo/FAO_0000001) be plac…
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Minimal example:
Current text:
Terms in ASCT+B tables are in red. Panel A shows the indirect relationship between 'descending loop of Henle' and 'nephron tubule' in Uberon. Panel B shows the…
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(related TAO request #1848184)
We need to add a new category for joints:
Joint is_a anatomical cluster.
The Foundational Model of Anatomy has a definition that we could adopt:
Joint ... consists of…
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To recreate:
1. create two activity units A1 A2
2. assign the same BP class to both units
E.g
In the underlying RDF, this renders as two disconnected BPs, also in the GE:
(pleas…
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Ideally, intrinsic neurons have all of their synapses restricted to a particular region of the CNS. In real life there may be a few stray synapses just outside the region.
Label: 'synapses restrict…
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I worry about the case sensitivity of curies such as
NCBITaxon:9606
i would recommend that identifiers adopt a single case (upper or lower), as it would likely reduce errors. In Bio2RDF, we adopt l…
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**Preferred term label:**
Bowel bag
**Synonyms**
**Definition (free text, please give PubMed ID)**
The volume of the abdomen that contains the small and large bowel (+ the inter space).
*…