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I keep encoutnering the following error wen running SSVM jobs in the batchtools/batchmark setting, specifically _after_ the tuning process appears to have completed without major issues:
```r
# ..…
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Hi,
I've trying to work on this for days and hope ppl here can provide me some solution. Currently, I set 6 knots and I have 7 lineages.
My codes are:
`Slingshot
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hello,
trying the example pipeline from
`https://bioconductor.org/packages/release/bioc/vignettes/sSNAPPY/inst/doc/sSNAPPY.html`
the function "generate_permuted_scores" never ends the calculations.…
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Looks like the new version of DBI is causing warnings with BatchJobs. I'm not sure the exact
origin of the warning, it's buried in some of my code that uses `createRegistry`, `batchMap`, `batchSubmit…
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```{r}
library(furrr)
library(callr)
inner_loop
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Hello
"Create the database for tests then put the env var SILEX_MODE=test update test data base params in config/env/test.json"
Can you elaborate on this? What Database should I create and where is …
ghost updated
6 months ago
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Functions like `style_pkg()` could be parallelised well, at least in principle - and speed up styling much.
For pre-commit hook, we should probably disable this.
***
**Edit:** a related issue…
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Hi,
I am trying to run SPIEC-EASI with a phyloseq object containing the metagenomic info of prediabetic individuals. I have followed this tutorial: http://psbweb05.psb.ugent.be/conet/microbialnetwork…
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I am sorry to not have a reproducible example yet. My code base is very large and was running just fine until the job size became small. So I'll make a reproducible example after hearing some sugges…
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I'm estimating networks using small samples sizes (10-20) and low OTU richness (