zdk123 SpiecEasi issues

zdk123 / SpiecEasi

Sparse InversE Covariance estimation for Ecological Association and Statistical Inference

GNU General Public License v3.0

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issues

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Question about multi.spiec.easi

#273 AnnaClo opened 1 month ago
1
Spieceasi Error in if (max < min) stop("Did you flip min and max?") : argument is of length zero

#272 AnnaClo opened 1 month ago
4
Identifying Interactions Across Data Modalities (Potential New Way to Apply SpiecEasi)

#271 AntonKjellberg opened 2 months ago
1
Cross-domain analysis with virus and bacteria abundance matrices

#270 07Chengran opened 3 months ago
0
Running more than 2 matrices

#269 susheelbhanu opened 3 months ago
4
Issue with Sparse Network and Missing Nodes in Spiec-Easi

#268 07Chengran closed 3 months ago
3
How to filter output the results

#267 wfgui opened 3 months ago
0
Mac M1 / R studio Version 2024.04.2+764 (2024.04.2+764) / R 4.4.1 GUI 1.80 Big Sur ARM build

#266 madlam-tech opened 4 months ago
0
About getRefit function

#265 wfgui closed 3 months ago
0
Problems installing

#264 jspychalla opened 5 months ago
0
Using relative abundance in spieceasi？

#263 wfgui closed 5 months ago
1
Using Environmental data

#262 UhP88 opened 5 months ago
0
Using a pre-filtered OTU table based on occurrence and relative abundance in spieceasi

#261 suahin opened 7 months ago
2
How to add positive and negative associatons in the network.

#260 AlexCJ144 opened 7 months ago
1
R session aborted when using adj2igraph() with the tutorial data and code.

#259 vicflonun opened 7 months ago
2
Error in i_set_vertex_attr

#258 kaumudiprabhakara opened 7 months ago
5
Do not run multi.spiec.easi with unidentical sample scheme

#257 TeeratatK closed 7 months ago
3
spiec easi in multiple steps

#256 gastronaut82 opened 8 months ago
8
cross-domain interactions

#255 gastronaut82 opened 8 months ago
1
I have a question for interpretation of my network results

#254 Marjan-Ghotbi opened 9 months ago
0
Error in installing packages

#253 jlche opened 10 months ago
3
ncpus not working when use sparccboot in windows.

#252 1870694249 opened 10 months ago
0
Constant Crashing with no error codes/etc

#251 szymanskishay opened 11 months ago
1
Optimal lambda may be outside the supplied values

#250 ntromas opened 1 year ago
0
Error when running adj2igraph on spiec.easi output: Error in t(object) : invalid 'lazy' to R_sparse_transpose()

#249 wesleysparagon opened 1 year ago
8
Using SPIEC-EASI on transcriptomic data: plant/microbes

#248 GossypiumH opened 1 year ago
0
R crashes whenever I run SpiecEasi::symBeta

#247 gastronaut82 opened 1 year ago
5
Github actions

#246 zdk123 closed 1 year ago
0
Fix github actions workflow and deprecate travis badges.

#245 zdk123 opened 1 year ago
0
Update pulsar and Matrix deps

#244 zdk123 closed 1 year ago
0
Coloring plot_network

#243 gastronaut82 opened 1 year ago
3
Error 'Csparse_transpose' not found

#242 GuillaumeSwB closed 1 year ago
6
Return precision matrix in cov2prec

#241 zdk123 closed 1 year ago
0
Wrong return value in cov2prec()

#240 stefpeschel closed 1 year ago
2
Can not install SpiecEasy package on my Macos Ventura.

#239 Becheler closed 1 year ago
2
R aborts and says "fatal error" and forces session to be restarted

#238 kenbyrrrd closed 1 year ago
2
Can't get network to run even at rep.num=1

#237 kkajihara closed 1 year ago
3
Automate spiec-easi for non amplicon data

#236 pbelmann closed 1 year ago
6
How can I get edge-weight from Spiec-Easi?

#235 scottwlee opened 1 year ago
1
SpiecEasi on conda

#234 sghignone opened 1 year ago
5
qqdplot_comm() function does not provide expected results

#233 SarithaKodikara opened 1 year ago
0
Network with no edges

#232 minzooey opened 1 year ago
1
caught segfault error on cluster

#231 GossypiumH opened 1 year ago
2
Update license

#230 zdk123 closed 1 year ago
0
treatment of metagemoic data for virus + metabarcoding 16S data for bacteria

#229 yannreynaud closed 1 year ago
2
Set a license

#228 laurentheirendt closed 1 year ago
4
Unable to install SpiecEasi (Pulsar is removed from CRAN)

#227 kawanoii closed 1 year ago
2
Add github action

#226 zdk123 closed 2 years ago
0
Unable to Install SpiecEasi

#225 kbazany opened 2 years ago
5
Model selection for rank/beta penalty criterion of the SLR

#224 erfanshekarriz opened 2 years ago
2