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## Description
2500 flow cells stuck on "retrieve" are not being picked up for demultiplexing by the new automation.
More information on: https://docs.google.com/document/d/1iywLruJs5-ca4oOt8c7q…
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### Description of bug
I ran multiqc for cellranger multi output and get the error
### File that triggers the error
[web_summary.html.zip](https://github.com/MultiQC/MultiQC/files/15349383/web_sum…
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## Description
We need to regenerate many sample sheets to solve two issues:
1. As mentioned in #2922 the v2 sample sheets generated before 2024-01-25 don't have the patch on the Override cycles i…
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### Description of bug
I'm trying to process multiple thousands of samples with about 10 modules' result files per sample. To process 2000 of my samples, it took MultiQC nearly 100GB of RAM to comple…
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There is a recent bug that went unnoticed in the `bcl2fastq` and `bclconvert` modules (see https://github.com/nf-core/modules/issues/3794). The issue was that output files were not always captured by …
Aratz updated
9 months ago
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Hello Laurent !
I have this mistake showing when I tried to demultiplex a NextSeq 500 run with Aozan v3.0.2, using bcl-convert as demultiplexing tool.
And it seems that the [Settings] section in t…
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Hello there all.
Snakemake is trying to run the bcl2fastq command to obtain fastqs from the bcl files, but I got the following error when doing so:
```
2023-12-15 14:03:10 [2b8569c9a180] INFO: …
plhm updated
11 months ago
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Hi,
I have SmartSeq3 data that has been de-multiplexed to produce 192 pairs of fastq files with no fastq files provided for the indices. Is it possible to run 'kb count' on this data. I do not have a…
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Comparing "number of reads"
### `InterOp`
```python
ar = iop.index_summary(run_metrics, level='Barcode')
```
results in:
```
sample1/TTAGGC = 38423040.0 (ClusterCount)
sample2/GCCAAT = 7…
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### Description of bug
MultiQC gives the error message with the `bamdst` module
```
Traceback (most recent call last): …