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odomlab2
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sci-rocket
Snakemake workflow for (pre-)processing sci-RNA-seq3 data
MIT License
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MissingOutputException in rule starSolo_align
#34
plhm
opened
1 month ago
0
conda installation of dependencies / bcl2fast fake file > Lane specification
#33
plhm
opened
1 month ago
0
[BUG] Check - Hashing dashboard
#32
J0bbie
closed
3 months ago
0
Cached GTF or temp files?
#31
gauravvaidya16
closed
6 months ago
2
Cached GTF or temp files?
#30
gauravvaidya16
closed
7 months ago
0
sci-dash incorrect information
#29
AgedMordorBlue
opened
7 months ago
6
Add benchmarking options
#28
J0bbie
closed
7 months ago
0
Job time-outs, busy resources and trailing slashes
#27
AgedMordorBlue
closed
8 months ago
2
Hahsing script failing
#26
BournSupremacy
closed
7 months ago
1
Updates
#25
J0bbie
closed
8 months ago
1
Updates
#24
J0bbie
closed
8 months ago
0
Snakemake now failing with Slurm profile
#23
BournSupremacy
closed
8 months ago
1
PhiX Spike in Lane - Biasing QC
#22
plhm
closed
8 months ago
1
starSolo_align files Missing
#21
plhm
closed
7 months ago
4
STAR Alignment - FileNotFoundError: [Errno 2] No such file or directory (...) GeneFull_Ex50pAS/raw/barcodes.tsv
#20
plhm
closed
8 months ago
2
python dependencies modules: requiring manual installation
#19
plhm
closed
8 months ago
6
Updates
#18
J0bbie
closed
8 months ago
0
bcl2fastq > cbcl files not found
#17
plhm
closed
8 months ago
2
Use open-source graphing library for sci-dash
#16
J0bbie
closed
9 months ago
1
PE 150 FastQ reads
#15
plhm
closed
8 months ago
14
Add % intronic reads
#14
lsaund11
closed
9 months ago
1
Merge Undetermined.fq files from multiple sequencing runs (BCL) prior to sample-demuxxing.
#13
J0bbie
closed
9 months ago
1
Merge various updates and haplotying sub-procedure.
#12
J0bbie
closed
9 months ago
0
Demultiplexing step taking very long
#11
BournSupremacy
closed
7 months ago
3
Add optional haplotyping rules for F1 mouse.
#10
J0bbie
closed
9 months ago
1
Hashing
#9
J0bbie
closed
10 months ago
0
Add nExpectedCells to sample-sheet
#8
J0bbie
closed
11 months ago
1
Add hashing script
#7
J0bbie
closed
9 months ago
3
Add all parameter options into the config file
#6
J0bbie
closed
11 months ago
1
Add cluster-profiles
#5
J0bbie
closed
11 months ago
0
Add conda envs to rules.
#4
J0bbie
closed
1 year ago
1
Set-up unit-testing
#3
J0bbie
closed
7 months ago
0
Generate GitHub Pages
#2
J0bbie
closed
1 year ago
1
Counting - exonic and/or intronic?
#1
jpcleland
closed
1 year ago
2