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Currently, `CalculateCodonSpecificRibosomeDensity` ignores the first 200 codons. Two issues are (1) it's inflexible and (2) this assumes the user created a codon_positions_file with the first 200 codo…
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Sumstats API loading needs migrating to codon and file paths updated accordingly
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Would like to write some code for the visualisation of nucleotides in meta-feature plots. This is necessary as we need distinct approaches for codon/codon pair meta-feature plots (CDS co-ordinates) an…
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Dear mapnh developers,
I have been trying to reproduce the example provided in this tutorial (https://github.com/BioPP/supp-mat/tree/master/mapdNdS), but I am getting this error message I can not …
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It would be helpful to have simulated data with slow codons to test our ability to detect slow codons.
@amandamok said:
> The simulated dataset in the example-datasets repository happens to be sim…
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README.md fib demo on x86_64 Ubuntu.
log2(10\**62) is 205, log2(10\**63) is 209.
Python number type has arbitrary precision, does codon restrict that?
If so, what are the limits?
P.S:
My int…
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**Original ticket**: https://humgenprojects.lumc.nl/trac/mutalyzer/ticket/166
**Original date**: 2014/04/11
**Original reporter**: *vasvale AND yahoo DOT COOM *
would it be possible to obtain the po…
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https://github.com/exaloop/codon
Codon is a high-performance Python compiler that compiles Python code to native machine code without any runtime overhead.
If Pemja will integrate Codeon, I bel…
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https://github.com/CamelCaseCam/CadBerry/blob/36dad3c8c382a2da26ca78d61ff2a99aaf7310f2/CadBerry/GILBuildEngine/src/GIL/Compiler/CodonEncoding.cpp#L74-L76
Small nitpick : stop codons are usually rep…
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Hi! I'm a Master's Student using Aliview and DataMonkey to do my thesis, but I keep running into the same issue when I input my data into DataMonkey. Based on a set of instructions from a PhD student,…