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Hello,
OrthoSNAP is a great tool - thanks for developing it!
I have a general question. Is there a way for orthoSNAP to output the removed in-paralogs and their corresponding orthologs? For my d…
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Dear authors,
As I am working with squamate genomes I wanted to test retraining the TOGA models for this group, and I have some questions regarding this. Any help is much appreciated!
1) I was f…
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Hello, I am attempting to run a Sylamer analysis, but I am unsure about the format and location of the fasta input file for human data. Could you please provide some guidance on this matter? Additiona…
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The GO terms associated with the quiver family do not seem accurate:
GO:1903818 positive regulation of voltage-gated potassium channel activity
GO:0032222 regulation of synaptic transmission, cholin…
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Replace the current MGI upstream pipeline with a local GO pipeline for the human orthology file.
Would be using the GO human file, the MGI GPI file, and a TBD (AGR) orthology file.
kltm updated
8 months ago
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Hello , thank you very much for the program !
However , I faced an error at the first step running wgd dmd.
```
Traceback (most recent call last):
File "/home/hiuyan/.pyenv/versions/3.6.12/bin…
hyyuu updated
9 months ago
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Dear,
I use Zebrafish as reference genome to identify the gene ortholog in different fish genomes. However, I find many genes are not annotated in the bed file generated by TOGA when we compared the…
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Hello there, I am having trouble discerning the difference between the labels for gene clusters in the gene_presence_absence.csv file.
Based on what I've read from previous resolved issues and docu…
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Hello,
I'm new to this field, so please forgive me for bothering you again. I'm having trouble figuring out how to obtain the necessary information for creating the file_orthologies dataset, specific…
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**Background**
Subtask for #839
Target management implementation
Target object includes:
- `Name` - target name. Shall be shown as hyperlink. By click it, the target details form shall be opened
…