geneontology pipeline issues

geneontology / pipeline

Declarative pipeline for the Gene Ontology.

https://build.geneontology.org/job/geneontology/job/pipeline/

BSD 3-Clause "New" or "Revised" License

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issues

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Storing noctua model in github has reached another limit

#378 kltm opened 1 week ago
0
Second state snapshot failing on GitHub checkout of noctua-models

#377 kltm closed 4 weeks ago
1
Produce package of "pathway-like" GO-CAM TTL files

#376 dustine32 closed 1 month ago
14
issue-265-go-cam-products pipeline no longer completes due to timeout

#375 kltm closed 2 months ago
2
Jenkins new snapshot pipeline failing early on "General error during class generation: Method too large..."

#374 kltm closed 2 months ago
1
Roll back (and then forward) "problematic" upstream files from selected resources

#373 kltm opened 2 months ago
12
Pipeline failure on being unable to find MGI upstream

#372 kltm closed 2 months ago
5
As pipeline(s) stabilize, increase frequency and automation

#371 kltm opened 2 months ago
3
Add "gopreprocess" pipeline to main pipeline workflows by code review

#370 kltm opened 3 months ago
0
Upload MGI upstream / "silver" to mirror.geneontology.io, with new filename, and point metadata to it

#369 kltm closed 2 months ago
9
Project review (last activity)

#368 kltm opened 3 months ago
0
Main pipelines failing on reductions from the addition of gorule 64

#367 kltm closed 3 months ago
6
Integrate MGI mouse annotations done in P2GO

#366 pgaudet closed 3 months ago
2
Imported ComplexPortal IDs not resolving as SGD IDs

#364 suzialeksander opened 3 months ago
5
noctua-models-migrations makes use of snapshot, rather than "NEO"

#363 kltm closed 3 months ago
5
Upstream issues with wormbase file causing pipeline issues

#362 kltm closed 4 months ago
1
GO Central / LBL machines cannot download GOA files

#361 kltm closed 3 months ago
4
incomplete file filtered_goa_uniprot_all_noiea.gpad.gz

#365 francoiscoste opened 4 months ago
5
Pipeline fails due to "Argument list too long"

#360 kltm closed 4 months ago
3
Confirm SGD products in GO release

#359 kltm closed 2 months ago
2
SGD to green flag GO release attempt

#358 kltm closed 3 weeks ago
2
PR refresh of SGD models conversions into noctua-models

#357 kltm closed 4 months ago
1
modify to test ontobio code

#356 sierra-moxon closed 4 months ago
0
Test SGD manual annotations exported from Noctua models

#354 dustine32 closed 3 months ago
5
Drop Solr (GOlr) indices from Zenodo archive bundle

#353 kltm closed 2 months ago
8
Consider (and attempt) blessing snapshots runs to "release" status

#352 kltm opened 5 months ago
13
Buy a new pipeline machine

#351 kltm opened 5 months ago
4
Automated (?) process periodically wipes skyhook home directory, requiring rebuild (was "Key / ssh error in pipeline...")

#350 kltm closed 6 months ago
10
Explore getting the pipeline completing again by adjusting settings and runtime parameters

#349 kltm opened 6 months ago
3
Issue go site 2093 metadata

#348 mugitty closed 7 months ago
4
For #1199

#347 mugitty closed 7 months ago
8
Pipeline fails due to ontobio errors wrt MGI

#346 kltm closed 6 months ago
9
Can no longer upload to Zenodo; due to recent Zenodo update?

#345 kltm opened 7 months ago
6
Update Jenkinsfile with FB anatomy

#344 kltm closed 7 months ago
1
Suppression of ND Annotations When Other Annotations come in from ISO and IEA loads

#343 ukemi closed 2 months ago
4
For #2093

#342 mugitty closed 8 months ago
2
fixes #145, add a GH action to check that watchdog code in Jenkinsfile is not bei…

#340 sierra-moxon closed 9 months ago
1
Issue 325 gopreprocess

#339 sierra-moxon closed 9 months ago
0
WormBase upstream having issues; use bypass and revert when ready

#338 kltm opened 9 months ago
6
GOA mirroring now running too long, overlapping

#337 kltm closed 4 months ago
1
Update Jenkinsfile for python3.10 dev-base docker change

#336 dustine32 closed 9 months ago
1
Switch noctua-models GitHub checkout to be the same as the ontology checkout

#335 kltm opened 10 months ago
0
add install from requirements.txt in go-site/scripts -- note this wil…

#334 sierra-moxon closed 10 months ago
0
add new image for docker dev-base, starting branch for incorporating gopreprocess

#333 sierra-moxon closed 9 months ago
3
Make sure that all MGI annotation products are covered by GO

#332 ukemi opened 11 months ago
4
Test ODK; changes to user used

#331 balhoff opened 11 months ago
1
Noctua annotations missing on snapshot??????

#330 ukemi closed 11 months ago
2
Add remainder mouse annotation file from uniprot upstreams to MGI data stream

#329 kltm opened 1 year ago
39
Add human orthology file to MGI datastream

#328 kltm closed 3 months ago
46
Add RGD orthology file to MGI datastream

#327 kltm closed 2 months ago
40