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geneontology
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pipeline
Declarative pipeline for the Gene Ontology.
https://build.geneontology.org/job/geneontology/job/pipeline/
BSD 3-Clause "New" or "Revised" License
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MGI xrefs failing GO checks
#408
kltm
opened
2 days ago
1
Run GOC parts of joint pipeline code on new machine
#407
kltm
opened
3 days ago
0
Experiment with piecemeal transition to GOA "upstreams"
#406
kltm
opened
3 weeks ago
0
Update go-raw-data Jenkinsfile for #399
#405
dustine32
closed
1 month ago
0
Update derivatives-from-goa Jenkinsfile for #399
#404
dustine32
closed
1 month ago
0
Update release Jenkinsfile for #399
#403
dustine32
closed
1 month ago
0
Update snapshot-post-fail Jenkinsfile for #399
#402
dustine32
closed
1 month ago
0
Update snapshot Jenkinsfile for #399
#401
dustine32
closed
1 month ago
0
Update PANTHER_VERSION to 19.0
#400
dustine32
closed
1 month ago
1
Switch PANTHER trees to version 19.0
#399
dustine32
opened
1 month ago
3
Ensure that the relation map used by ontobio in sync with the current state of the ontology
#398
kltm
opened
1 month ago
2
GPAD 1.2 to GPAD 2.0 seems to make an error with some relations
#397
kltm
opened
1 month ago
10
Make downloads pages for new species-oriented upstreams
#396
kltm
opened
1 month ago
0
Undo manual "damage" to amigo-staging
#395
kltm
closed
2 weeks ago
1
Clarify the "pass back" process for ontology and metadata
#394
kltm
opened
1 month ago
0
Assemble final second stage post-GOA with derivatives-from-goa pipeline
#393
kltm
opened
1 month ago
0
Make sure that stakeholders understand compounding index issues with larger data set
#392
kltm
opened
1 month ago
0
Test generation of blazegraph on larger products set
#391
kltm
opened
1 month ago
0
Ensure that larger product set can be preserved in long-term storage (currently Zenodo)
#390
kltm
opened
1 month ago
0
Remove skyhook's confinement-for-pipeline-388
#389
kltm
opened
1 month ago
0
Test EBI-GOA pipeline products through derivatives generation at GO Central
#388
kltm
closed
1 month ago
5
Explore adding the "complicated" (full provenance) GAF 2.2 header to the GPAD 2.0
#387
kltm
opened
1 month ago
7
"Temporary post filter" produces GPAD 1.2, instead of now desired GPAD 2.0
#386
kltm
closed
1 month ago
1
Error in ontobio prevents parsing some files
#385
kltm
closed
2 months ago
3
Rolling ontology build should have a time stamp
#384
pgaudet
opened
4 months ago
3
GPAD header suddenly changed
#383
pgaudet
closed
1 month ago
8
Create a "non-data" full release pipeline (ontology metadata curation only)
#382
kltm
opened
4 months ago
7
Close out no-longer-relevant pipeline tickets
#381
kltm
opened
4 months ago
0
Bugs in GPI 2.0 format
#380
suzialeksander
closed
4 months ago
4
adding in some ls logging output for the MGI upstream GPAD 2.0 creation on snapshot
#379
sierra-moxon
closed
4 months ago
1
Storing noctua model in github has reached another limit
#378
kltm
opened
5 months ago
0
Second state snapshot failing on GitHub checkout of noctua-models
#377
kltm
closed
5 months ago
1
Produce package of "pathway-like" GO-CAM TTL files
#376
dustine32
closed
6 months ago
14
issue-265-go-cam-products pipeline no longer completes due to timeout
#375
kltm
closed
7 months ago
2
Jenkins new snapshot pipeline failing early on "General error during class generation: Method too large..."
#374
kltm
closed
7 months ago
1
Roll back (and then forward) "problematic" upstream files from selected resources
#373
kltm
closed
4 months ago
13
Pipeline failure on being unable to find MGI upstream
#372
kltm
closed
6 months ago
5
As pipeline(s) stabilize, increase frequency and automation
#371
kltm
opened
7 months ago
3
Add "gopreprocess" pipeline to main pipeline workflows by code review
#370
kltm
closed
1 month ago
1
Upload MGI upstream / "silver" to mirror.geneontology.io, with new filename, and point metadata to it
#369
kltm
closed
6 months ago
9
Project review (last activity)
#368
kltm
closed
6 days ago
4
Main pipelines failing on reductions from the addition of gorule 64
#367
kltm
closed
7 months ago
6
Integrate MGI mouse annotations done in P2GO
#366
pgaudet
closed
7 months ago
2
Imported ComplexPortal IDs not resolving as SGD IDs
#364
suzialeksander
opened
8 months ago
8
noctua-models-migrations makes use of snapshot, rather than "NEO"
#363
kltm
closed
7 months ago
5
Upstream issues with wormbase file causing pipeline issues
#362
kltm
closed
9 months ago
1
GO Central / LBL machines cannot download GOA files
#361
kltm
closed
8 months ago
4
incomplete file filtered_goa_uniprot_all_noiea.gpad.gz
#365
francoiscoste
opened
9 months ago
5
Pipeline fails due to "Argument list too long"
#360
kltm
closed
9 months ago
3
Confirm SGD products in GO release
#359
kltm
closed
7 months ago
2
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