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Dear all,
I am trying to load the Giotto object from CosMx website (https://nanostring-public-share.s3.us-west-2.amazonaws.com/SMI-Compressed/SMI-ReadMe.html). I have downloaded the file, which is …
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Would it be possible to support flagser_memory to be able to use it from Giotto-TDA?
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The following images are used in demos but they are probably not entirely free to use:
demos/carousel/gaugin.jpg demos/carousel/leonardo.jpg demos/minimap/ermine.jpg
demos/carousel/giotto.jpg demos…
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User reports they use numpy to load/save persistence diagrams with dimension information.
```python
np.loadtxt('./rips.pers') …
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Hi,
I have an input matrix of 100,000 cells by 20,000 genes, and normalizeGiotto() exited with the below error.
```
Error in asMethod(object) :
Cholmod error 'problem too large' at file ../…
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**Describe the Error**
The miniconda installed by default is /root/.local/share/r-miniconda/. When pulled by singularity (which do not support root),
the miniconda env is lost.
...
**Error M…
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### Problem
Hello! I am having trouble getting the bullet points to work on my sphinx_rtd_theme project. I updated my conda environment and it seems that the bullet points were one of the things th…
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I have an error when running SpatialDWLS, do you know how to fix it?
![image](https://user-images.githubusercontent.com/71078929/178153847-f6171c43-1abb-45af-9cae-05a96836c5fa.png)
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I think it would be good to include the datasets we used in the benchmarks and reported on in the paper. Perhaps an extra folder `benchmarks` can be created with scripts that people can use to test p…
ulupo updated
3 years ago
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In scRNA-seq and Visium data, the first 50 PCs usually only explain a small proportion of total variance, but I saw this code used to make the scree plot: https://github.com/drieslab/Giotto/blob/d2d74…