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Hi Edgardo,
When running `captus_assembly extract -a 02_assemblies -o 03_extractions -n target_file.fasta -p SeedPlantsPTD -m SeedPlantsMIT -c` on a hpc with Captus version: v1.0.1, the run termina…
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**What happened**:
Currently , the jobqueue component of `dask-gateway` relies on sudo to do user authentication on its own, rather than integrating with authentication mechanisms provided by the …
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The latest release of slurm apparently supports a single unique job ID across a federated cluster. For the moment though, if you submit a job to slurm on host X with `#SBATCH --clusters=Y` to make it…
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The work in https://github.com/ESMValGroup/ESMValCore/pull/991 by @stefsmeets will allow users to get html reports of their runs (both from Jupyter and CLI) - awesome! - but it's a good idea we set up…
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If we can imagine a way for an HPC center to provision clusters (where each is owned by a user) via the Flux Operator, on demand for a user or group, we'd want control of instance types / sizes / cost…
vsoch updated
6 months ago
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Hello, I wanted to bring up the performance of ashlar. We use ashlar very heavily in our image pre-processing pipeline, but it's been pretty slow because of its single-threadedness, understandably bec…
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presently json file with pipeline config is string. To work smoothly in CBRAIN all files should be declared as such file inputs, including json, and any files mentioned within json.
Note 1 Mind CBR…
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Hi,
Users of large HPC clusters normally don't have sudo or root permissions. They cannot use Docker for security reasons, and the Singularity build of the Docker container fails because of the n…
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Dear Jupyter Developers:
We manage a multi-user HPC cluster. Several users of this cluster are asking for running Jupyter notebook server on the cluster and access the server via their laptop brows…
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## Motivation
The current API, for interfacing with compute resources (local computer, remote cluster, HPC, etc) is principally split into two components:
1. The `Transport` class handles interf…