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Requested by @amkwong:
Certain LZ dashboard items do not properly respect configuration options.
For example: "Resize to data" does not obey `button_html` or `button_title` (the label is hard-c…
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Hi,
I am trying to plot my own fine-mapping results to the LocusZoom plot. However, sometimes the fine-mapped region is omitted in the plot, and sometimes it shows fine.
For example, in one regi…
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Currently, there are no options to select the LD reference. Would be a great feature to choose from different LD sources. This could mean different 1KG populations or LD estimates from other studies. …
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For a plot displaying a single variant which affects multiple genes and multiple tissues, we want to give the user the ability to choose to highlight results for a single gene:
- When the user cli…
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For the scatter plot view ("group by gene"), we would like to sort the x-axis by gene position (rather than gene name). This would give the x-axis a sense of meaning.
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Related to #6, adding a gene track below the single-variant view can help orient the user to the relative positions of the genes affected by the current variant.
The sorted positional order for ge…
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To reproduce:
1. Hover over a tooltip.
2. ctrl-tab away from the tab.
3. come back, and it stays open until I close it or re-mouse-out its point.
On , clicking a point usually makes it exclusive…
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Hi, guys:
It is amazing that IGV could also show GWAS data. But I found a few issues. It would be great if someone is interested in addressing them:
I could not move thee top “Gene” panel to t…
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Reported by @pjvandehaar
# Summary
The LocusZoom "download as image" button does not work for extremely large region sizes.
# Steps to reproduce
An example page where this occurs is:
http://…
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I'm using pyGenomeTracks to plot genes, and get this output:
the upper track is from be…