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## Description
I recently noticed that NUTS performance became terrible on my ODE models.
Here is an example with the Lorenz attractor, implemented such that NUTS can be used to sample the initial c…
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I am trying out the Lorenz example on the home page as I have seen others do. I tried it with both the `pyplot()` and `plotlyjs()` backends.
With `plotlyjs()`, the first time through, I hit an error …
rand5 updated
7 years ago
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We need an CellML example which can be executed with existing software, i.e. opencor.
The current leloup-cellml cannot be executed and does not work.
I would prefer a simple timecourse simulation …
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Currently FFmpeg produces really low quality animations as the colors are nearly always off. This is unfortunate especially as ImageMagicks convert does not cope that good with longer animations where…
H-M-H updated
7 years ago
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In PMR you can add a COMBINE Archive manifest file to a workspace, then when you create an exposure with that manifest users get a button to download the COMBINE Archive. See https://models.physiomepr…
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Just trying to run the nlts example for continuous time. The command:
using DynamicalSystems, PyPlot
ds = Systems.lorenz() # Max lyapunov is around 0.90
dt = 0.05
x = timeseries(ds, 1000.0; dt…
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Found this issue which might be coming from libSBML 5.15.0
I was testing phrasedml execution and found errors. Realized that the python script generated from sedml is different. Below is what I get…
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Sorry for bothering you with this but I am trying to put together a notebook that animates the solution to the diffusion equation. The code below works well for plotting slices but the animation seem…
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We are slowly moving to MEP12 compliant examples.
`sphinx-gallery` was originally created from matplotlib's code to create a sphinx gallery but has since been packaged properly, and evolved to hav…
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This example produces an error in the syntax of bboptimize:
using BlackBoxOptim
ols_bestfit, ols_error = bboptimize((betas) -> ols_regression_objective(betas', x1, y1),(-10.0, 10.0); dimensions …