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#### Current Behavior
Opens the door to leveraging algorithms in the areas of Centrality, Community Detection, Pathfinding, Topological Link Prediction, etc. Bringing to bear advances made in Machine…
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Graph generative models are important for the tasks we have been describing.
The core idea is to posit a model which defines some distribution over graphs ```P(G)```, for instance via a low dimensi…
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Classifying differential expression by GO hierarchy
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http://advances.sciencemag.org/content/4/7/eaap7885 is relevant but missing. By @isayev et al.
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Right now autodE only models single step elementary reactions automatically (for multi-step the intermediates must be known). If there are intermediates, they are ignored. Which is a problem for model…
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This issue contains monthly updates to an automatically ranked list of PubMed papers as candidates for curation in the Bioregistry. Papers may be relevant in at least three ways:
(1) as a new prefix…
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**Describe the bug**
Hi All, I am having some problems with AutodE trying to calculate an energy profile of a reaction of a direct carboxylation with CO2. No matter what I do, the calculation exits w…
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In my P2GO annotations I wanted to model I have some SO extensions, such as SO:0100014 n-terminal region (of the has_input H2Bv3 Ddis)
I noticed I cannot add these in noctua.
Also for model
gomo…
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In the [Pretrained Molecular Representations](https://torchdrug.ai/docs/tutorials/pretrain.html) tutorial GIN model was passed to InfoGraph:
```model = models.InfoGraph(gin_model, separate_model=Fals…
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Hello, I would like to ask about energy prediction using SCHNET. According to the results you provided, under the ST split of the tiny dataset, is its MAE 1.17 Hartree or 1.17 * 10^(-2) Hartree? I tri…