-
Hello:
When run `CreateMotifMatrix`:
```{r}
library(chromVAR)
library(JASPAR2020)
library(TFBSTools)
library(motifmatchr)
library(BSgenome.Mmusculus.UCSC.mm10)
DefaultAssay(pbmc)
-
sessionInfo()
R version 4.3.0 (2023-04-21)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /usr/lib64/libopenblas-…
-
Hi,
Last year a clustering option was added to the `dyad-analysis` pipeline, but I couldn't make it run. It seems to fail upon executing `matrix-from-patterns` because of missing files.
This is…
-
Hello,
In going through all the tests here I've found numerous mistakes in this test corpus. Many "expected" values show one allele only of a two allele variant. This is mostly true for the CHM1/…
-
I am interactively running the makeTRN-proximalonly-demo.R script which Seth fixed a database compatibility issue. It looks like it doesn't find any binding site for TF. I wonder whether this issue is…
-
## Prework
* [X] I understand and agree to [help guide](https://books.ropensci.org/targets/help.html).
* [X] I understand and agree to [contributing guide](https://github.com/ropensci/targets/blob…
-
Hello, I keep encountering this error when trying to run the Methyl-SNP-seq-main/Read_Processing/DeconvolutionWithCalibration python script:
/home/torres01/software/Methyl-SNP-seq-main/Read_Proce…
-
I noticed that gvim was scrolling horrendously slowly after archlinux switched from gtk2 to gtk3 for gvim. Changing the build back to gtk2 solves the problem.
To reproduce: Open a file with many hund…
-
Hello, I'm trying to use the process of cisdynet. However, the following error message appears.
WorkflowError in line 25 of /data/DATAprocess/licg/software/cisDynet_snakemake/atacqc/cisDynet_snakem…
-
Proposal for discussion and testing to adopt f-strings, new in Python 3.6 (see python docs and PEP 498), instead of `str.format()` and decimal style string formatting. See this and subsequent comments…