PriceLab TReNA-Legacy issues

PriceLab / TReNA-Legacy

Fit transcriptional regulatory networks using gene expression, priors, machine learning

2 stars 1 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

scheduled tasks proposed for trena package update

#17 paul-shannon opened 7 years ago
2
Add Naive Solver to Ensemble & Added RandomForest Selection Method

#16 noahmclean1 opened 7 years ago
0
Naive Solver Updated to New Version

#15 noahmclean1 closed 7 years ago
0
adding Naive solver

#14 noahmclean1 closed 7 years ago
0
refactored CandidateFilter and Solver base classes so that config is done in constructors

#13 paul-shannon closed 7 years ago
0
Description of expression data

#12 jocelynnpearl opened 7 years ago
0
initialize FootprintFilter with the URIs it needs - they are fixed over the lifespan of the object

#11 paul-shannon opened 7 years ago
0
"Target gene mean expression is in the bottom 10% of all genes in the assay matrix"

#10 paul-shannon opened 7 years ago
0
"Error in if (Cmax < eps * 100) {: missing value where TRUE/FALSE needed"

#9 paul-shannon opened 7 years ago
0
Error in svd(x, nu = 0): infinite or missing values in 'x'\n"

#8 paul-shannon opened 7 years ago
0
need "show" method for TReNA class

#7 paul-shannon opened 7 years ago
0
error in ensemble method pca step: "dim(X) must have a positive length"

#6 paul-shannon opened 7 years ago
1
Add r2 for the returned trn object

#5 lhdcsu closed 7 years ago
3
rownames on the TRN data frame are useless

#4 lhdcsu closed 7 years ago
3
running a function--getTfbsCountsInPromoters--in makeTRN-proximalonly-demo.R

#3 dauss75 opened 8 years ago
10
more install dependancies

#2 bheavner closed 7 years ago
5
Install instructions

#1 wasade closed 7 years ago
1