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Dear tool developers,
Thanks very much for the most recent updating of the tool. I'm trying
Sorry that I cannot figure out the error message my self. I will be super appreciated if could have som…
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Hello! Looking at the COSMIC website, the ID signatures are all derived from build 37. Is it possible to extract COSMIC ID signatures from build 38 vcfs? Thanks for your time!
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Hello,
Really appreciate your support towards the analysis of SigProfiler.
I have noticed something a bit strange during my analysis. Would be grateful to confirm with you whether this is a real co…
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**Submitting author:** @WSDeWitt (William DeWitt)
**Repository:** https://github.com/harrispopgen/mutyper
**Branch with paper.md** (empty if default branch):
**Version:** v0.7.0
**Editor:** @lpantano…
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Hi Dr. Wang
I have been using sigprofile_extractor feature in your package to find mutation signatures in my data set, and I found out that the mutation signatures that are being called are not mat…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/danro9685/RESOLVE
Confirm the following by editin…
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Hi SigProfiler team
I had the following error while running:
>>> sig.sigProfilerExtractor("vcf", "Extractor_test", data, reference_genome="GRCh38", opportunity_genome = "GRCh38", exome = True, mini…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/danro9685/SparseSignaturesPlus
Confirm the follow…
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Hi,
I'm trying to reproduce some results with SigProfiler but I didn't succeed.
I've made, for each cancer type, mutational catalogs from this file `WGS_PCAWG.96.csv` downloaded from `https://dcc…
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Hi, when I used sigminer, I met some problems.
1. How do you define the similarity between the sigminer signatures and the cosmic signatures?
2. How to get the best and proper signature number?
3…