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ShixiangWang
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sigminer
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
https://shixiangwang.github.io/sigminer/
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Issue with read_vcf function
#464
arianlundberg
opened
5 days ago
3
Request to make sig_tally output a matrix when run on single sample rearrangement datasets
#463
selkamand
closed
1 week ago
2
About relative contribution and mutation counts in samples
#462
ShepherdZh
closed
2 weeks ago
1
warning in read_maf_minimal
#461
ShixiangWang
opened
1 month ago
0
StarSignDNA
#460
ShixiangWang
opened
1 month ago
0
mm39 mouse gbuild
#459
karolina16
opened
1 month ago
1
Warning when running example data through sigminer rearrangement tally
#458
selkamand
closed
2 weeks ago
2
Fragile and silent dependency on 'copynumber' in SV signature tally
#457
selkamand
closed
2 months ago
2
v3 plan & roadmap
#456
ShixiangWang
opened
2 months ago
0
https://www.biorxiv.org/content/10.1101/2024.05.20.594967v1
#455
ShixiangWang
opened
2 months ago
0
Update fun docs
#454
ShixiangWang
closed
3 months ago
0
Making sig_tally output a matrix when run with a single sample in ID / DBS / ALL mode (like SBS already does)
#453
selkamand
closed
5 months ago
3
Questions about sig_fit()
#452
xiw588
closed
5 months ago
4
Please do not change future options
#451
HenrikBengtsson
closed
4 months ago
1
'Matrices' returned by sig_tally are actually just vectors when only 1 sample is supplied
#450
selkamand
closed
6 months ago
3
Custom color problem
#449
RuimeiL
closed
8 months ago
1
Rules of CNV/SV signature selection
#448
RuimeiL
closed
8 months ago
4
Support T2T genome
#447
ShixiangWang
closed
8 months ago
3
for the mode "ID", error
#445
eajeong
closed
8 months ago
2
Error in RS analysis
#444
RuimeiL
closed
8 months ago
3
cosmic signature outdated
#442
ShixiangWang
closed
8 months ago
1
Issue recording from email
#441
ShixiangWang
closed
9 months ago
0
Error: package or namespace load failed for ‘sigminer’
#439
benjamhbrs
closed
10 months ago
1
An error is detected in bootstrap fitting process
#438
zxwang-cloak
closed
1 year ago
7
异常高的SBS39的组分
#436
wangshun1121
closed
12 months ago
12
issues of applying sig_extract
#435
xiw588
closed
1 year ago
1
Add annotations for exposure profile show_sig_exposure(mt_sig)
#433
xiw588
closed
1 year ago
16
issues when using data frame as input for get_Aneuploidy_score function
#431
WiesVallentgoed
closed
1 year ago
5
support custom oppo matrix in from option of sig_convert?
#430
ShixiangWang
opened
1 year ago
0
how to pick the number of signature based on the index.
#428
songeric1107
closed
12 months ago
16
update bib reference data and doc
#427
ShixiangWang
closed
1 year ago
1
fix: changed hardcoded 'multisession' to `set_future_strategy` ...
#426
selkamand
closed
1 year ago
1
Warning: Strategy 'multiprocess' is deprecated in future (>= 1.20.0)
#425
selkamand
closed
1 year ago
0
https://www.biorxiv.org/content/10.1101/2023.02.09.527740v1.full
#424
ShixiangWang
opened
1 year ago
3
Feature Request: Take a minimal data.frame as input
#423
selkamand
closed
1 year ago
3
getSeq
#422
ShixiangWang
closed
1 year ago
1
Row names discrepancy for latest_CN_GRCh37CNS_TCGA
#421
dnousome
closed
1 year ago
2
show_cn_distribution with scale_chr = T
#420
jrcodina
closed
1 year ago
4
signature and reference version problem
#419
Aimee2018
closed
1 year ago
5
idea from panel sig
#418
ShixiangWang
opened
1 year ago
3
show_cn_distribution() y axis clarification
#417
rajeha
closed
1 year ago
3
show_cn_freq_circos() y axis
#416
rajeha
closed
1 year ago
2
get_sig_similarity only goes up to COSMIC_30
#415
maia-munteanu
closed
1 year ago
2
Getting similarities for CNV signatures
#414
rajeha
closed
1 year ago
6
感觉诗翔兄的创意被Nature剽窃了。。。
#413
wangshun1121
closed
2 years ago
3
update cosmic reference signature
#412
ShixiangWang
closed
1 year ago
1
增加一个cn signature的文档
#411
ShixiangWang
closed
2 years ago
0
SBS signatures from sigprofile_extractor do not match COSMIC signatures on COSMIC website
#410
kevlumbus
closed
2 years ago
7
show_catalogue如何让纵坐标显示率而不是突变的数量。
#409
lincj1994
closed
2 years ago
1
show_catalogue需要保持行名和示例数据一致吗。
#408
lincj1994
closed
2 years ago
2
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