issues
search
ShixiangWang
/
sigminer
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
https://shixiangwang.github.io/sigminer/
Other
147
stars
19
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
SBS signatures from sigprofile_extractor do not match COSMIC signatures on COSMIC website
#410
kevlumbus
closed
2 years ago
7
show_catalogue如何让纵坐标显示率而不是突变的数量。
#409
lincj1994
closed
2 years ago
1
show_catalogue需要保持行名和示例数据一致吗。
#408
lincj1994
closed
2 years ago
2
Cannot guess the genome build, please set it by hand!
#407
jingydz
closed
2 years ago
4
get_Aneuploidy_score for exome
#406
joonan30
closed
2 years ago
4
V3 plan: a OOP design and implementation
#405
ShixiangWang
closed
2 years ago
22
A benchmark study
#403
ShixiangWang
closed
2 years ago
1
这里的UMAP有点意思
#402
ShixiangWang
closed
2 years ago
0
clonesig
#401
ShixiangWang
closed
2 years ago
0
signature decomposition of SigProfileExtractor vs. get_sig_similarity?
#400
amootta
closed
2 years ago
3
HDP
#399
ShixiangWang
closed
2 years ago
0
sigprofilerclusters
#398
ShixiangWang
closed
2 years ago
1
add biotreasury bagde
#397
likelet
closed
2 years ago
0
关于sig fit 和 sig denovo的问题
#396
KirsieMin
closed
2 years ago
36
关于函数show_sig_bootstrap_stability的相关提问
#395
KirsieMin
closed
2 years ago
2
如何理解CNV signature分析时需要的input matrix？
#394
lincj1994
closed
2 years ago
5
问题：使用sig_tally来解析WES样品的SBS Signature时，如何设置use_syn？
#393
wangshun1121
closed
2 years ago
7
Miswritten parameter useSyn used in sig_tally examples in the sigminer book
#392
toddajohnson
closed
2 years ago
1
Error in cutree(h, k = nbasis(object))
#391
Sonia-Bedi
closed
3 years ago
5
repairSig
#390
ShixiangWang
closed
2 years ago
1
Error in get_sig_similarity() function
#389
aditisk
closed
3 years ago
3
`output_sig` error when add_trans_bias option is used
#387
joonan30
closed
3 years ago
10
What license is this released under?
#386
jbedo
closed
3 years ago
5
optimal bootstrapping parameter
#385
joonan30
closed
3 years ago
1
分析Mutational Signature的时候如何处理WES数据中的‘Intron’和‘IGR’突变？
#384
lincj1994
closed
3 years ago
6
bioconda r-sigminer throws error
#383
ypradat
closed
3 years ago
3
直接将 sigflow 和 sigminer 整合
#382
ShixiangWang
closed
2 years ago
8
show_sig_profile各signature纵坐标的范围ylim怎么调成一致？
#381
lincj1994
closed
3 years ago
3
sig_fit method的选择
#380
lincj1994
closed
3 years ago
2
可否考虑用分出来的Signature对样品聚类？
#379
wangshun1121
closed
3 years ago
1
Group Rank Dotplot
#378
mhjiang97
closed
3 years ago
2
change the color of show_group_comparison()
#377
xiw588
closed
3 years ago
5
show_sig_feature_corrplot() error
#376
xiw588
closed
3 years ago
4
get_sig_feature_assocaiton() error
#375
xiw588
closed
3 years ago
9
Questions about CNV analysis | Aneuploidy Scores implementation
#374
xiw588
closed
3 years ago
21
CNV mutational signature based on CNS file
#373
xiw588
closed
3 years ago
3
show_sig_consensusmap change cluster label color
#372
xiw588
closed
3 years ago
3
change colnames
#371
taoziyu97
closed
3 years ago
1
"Zero INDELs to analyze after dropping 'complex' labeled records!" error
#370
tucker-bower-psjh
closed
3 years ago
14
sigprofiler issue
#369
ShixiangWang
closed
3 years ago
4
Questions about running sigminer on large WGS data in batch
#368
xiw588
closed
3 years ago
4
sig_tally报错
#367
xuenannan
closed
3 years ago
6
Sigflow 默认无法超过9个signature的exposure plot输出
#366
ShixiangWang
closed
3 years ago
2
add mm9
#365
lihm1
closed
3 years ago
0
add mm9 data
#364
lihm1
closed
3 years ago
0
add mm9
#363
lihm1
closed
3 years ago
1
Error of show_sig_exposure
#362
xiw588
closed
3 years ago
3
Generate cn data for for sigminer functions
#361
ConDem94
closed
3 years ago
8
Questions about reading in vcf.gz file
#360
xiw588
closed
3 years ago
2
CRAN 提醒
#359
ShixiangWang
closed
3 years ago
1
Previous
Next