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In most Zeiss CZI files I see, there is a ContrastMethod field per Channel but it doesn't get mapped to the matching field in the OME-XML Channel element. Can that be added?
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Validating the companion files generated from e0d8cf8e7a723e00879c483c4e3bfe6ff2c6534e, a few immediate points of feedback:
- the generated metadata file includes many empty `Well` elements with du…
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Hello,
I had a go to BDP2 with some data from Viventis (time series 65 GB). First of all the reading of the files works quite nice now.
You can read the data as tif series using pattern matchin…
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BIDS accepts ome-zarr data in its microscopy extension, but not in its main MRI-related specification.
In most cases, MRI volumes are small enough that chunked formats do not make sense, but MRIs…
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**NB** This workflow has been moved to https://github.com/IDR/mkngff_upgrade_scripts (main README)
Once a submission has been processed by BioStudies, it will become available at a URL like:
…
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I downloaded the latest 3.2 for windows. I try to open a stack of .jpg files. Vaa3D can't find loci_tools.jar. So, I download from OME. Vaa3D doesn't like that version for some reason.
It looks lik…
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- Download of multiple files is not working [29023](https://www.openmicroscopy.org/qa2/qa/feedback/29023/)
- ome.tiff export is only possible for one file at a time [29022](https://www.openmicroscopy…
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Hello,
The issue is not really a bug just me not figuring out your workflow. How is the *.mrx import towards Omero supposed to be conducted. I know there is a Importer Python Script importer for …
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I have been trying to extract time stamps from a time-course image, but it has been giving me incorrect values. For example, using the ND2 file provided in this example [https://github.com/ome/bioform…
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Instead of the nopixels flag currently employed for selecting companion files, we will shift to a using bit masks that can store multiple flags if necessary.
This will allow for expansion and flexibi…