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Running `make` for all projects/templates currently produces this error:
```
Traceback (most recent call last):
File "/home/harry/ontogpt/.venv/bin/gen-project", line 8, in
sys.exit(cli())
…
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Hi,
Thanks for a great initiative, can't wait to try it!
I set up a condaenv with py3.9
Added poetry and oaklib
conda install -c conda-forge poetry
pip install oaklib
Then followed readm…
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seeing this error today afternoon and per Chris pinging @hrshdhgd
Traceback (most recent call last):
File "", line 1, in
File "/Users/marcin/Documents/VIMSS/ontology/LLMs/ontogpt/.venv/lib/p…
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I added a new template and ran `make`. I get:
```
V=$(poetry run python -c "import ontogpt;print('.'.join((ontogpt.__version__).split('.', 3)[:3]))") ; \
sed -i '/^version:/c\version: '"$V"'' CI…
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[These lines](https://github.com/monarch-initiative/ontogpt/blob/df3c0d0e8040fd86283646ac106d5bc44773e961/src/ontogpt/cli.py#L186):
```
if len(input) < 50 and Path(input).exists():
…
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When running `ontogpt` getting the raw output from GPT models is quite fast (less than 5s), but the process of grounding the extracted entities is really slow (it can take minutes)
It is useful to …